CB417302

Overview
NameCB417302
Unique NameCB417302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3579 contig Csv1_Contig3579:158..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.311e-53
Identity = 108/164 (65.85%), Postives = 125/164 (76.22%), Query Frame = 2
Query:   62 MSLIPSFFGNRRSS-VFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            MSLIP  FG+RRSS +FDPFS+DV+DPFR+                 GE SAF NTR+DWKETPEAHVFKADLPGL+         +DR LQISG+RN+EKEDK+D W RVERSSG F RRFRLPENAKMD++KASMENGVLTVTVPK EE KK +V++I+ISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNS---------GETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK-EEMKKPDVKSIEISG 154          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.549e-53
Identity = 106/164 (64.63%), Postives = 124/164 (75.61%), Query Frame = 2
Query:   62 MSLIPSFFGNRRSS-VFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            MSLIP  FG+RRSS +FDPFS+DV+DPFR+                 GE+SAF NTR+DWKETPE HVFK DLPGL+         +DR LQISG+RN+EKEDK+D WHR+ERSSG F RRFRLPENAKMD++KASMENGVLTVTVPK EE KK  V++I+ISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNS---------GESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK-EEVKKPEVKSIEISG 154          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.072e-51
Identity = 102/163 (62.58%), Postives = 119/163 (73.01%), Query Frame = 2
Query:   62 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            MS+IPSFFG RRS+VFDPFSLDVWDPF+D                  E +AFVNT +DWKETP+AHVFKADLPGL+         + + LQISG+RN EKE+K+D WHRVERSSG F RRFRLPENAK+D +KA+M NGV+TVTVPK  E KK  V+AI ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGK-----ETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKV-EIKKPEVKAIDISG 157          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.396e-50
Identity = 102/167 (61.08%), Postives = 120/167 (71.86%), Query Frame = 2
Query:   62 MSLIPSFFGNRR---SSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAE-EAKKANVRAIQISG 550
            MSLIPSFFGN R   +++FDPFSLDVWDPF++                   +SA  N RVDWKET EAHVFKADLPG++         DD  L+ISG+R++EKE+K DTWHRVERSSG FSR+FRLPEN KMD++KASMENGVLTVTVPK E   KKA V++I ISG
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPS------------SSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKKKAQVKSIDISG 155          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.686e-49
Identity = 99/163 (60.74%), Postives = 114/163 (69.94%), Query Frame = 2
Query:   62 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            MS+IPSFF ++RS++FDPFSLD WDPF+                   E +A VN R+DWKETPEAHV KADLPG++         D R LQISG+R  E+E+K DTWHRVERSSG F RRFRLPENAKMD +KA MENGVLTV VPK EE KK  V+AI ISG
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIISTEPAR----------ETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVVVPKEEEEKKPMVKAIDISG 153          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.093e-48
Identity = 96/163 (58.90%), Postives = 117/163 (71.78%), Query Frame = 2
Query:   62 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            MSL+PSFFG RR++VFDPFSLDVWDPF                    + +AF N +VDW+ETPEAHVFKAD+PGL+         D   LQISG+R+ E E+KSDTWHRVERSSG F RRFRLPENAK++ +KASMENGVL+VTVPK +E+ K  V+++ ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAK------DVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQES-KPEVKSVDISG 156          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.422e-48
Identity = 97/146 (66.44%), Postives = 110/146 (75.34%), Query Frame = 2
Query:  110 DPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQIS 547
            DPFSLDVWDPF+D                  E SAFV+TR+DWKETPEAHVFKADLPGL+         DDR LQISG+RN+EKEDK+D WHRVERSSG F RRFRLPENAKMD++KA+MENGVLTVTVPK EE KK  V++I+IS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQ---ENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK-EEIKKPEVKSIEIS 142          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.082e-48
Identity = 96/163 (58.90%), Postives = 116/163 (71.17%), Query Frame = 2
Query:   62 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            MS+IPSFFG+RRS+V +PFSLD+WDPF+D                  E +AF NT +DWKETP+AHVFKADLPGL+         + + LQISG+RN EKE+K++ WHRVE SSG F RRFRLPENA +D +KA MENGVLTVTVPK  E KK  V++I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGK---ETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKV-EMKKPEVKSIHISG 159          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.249e-48
Identity = 98/163 (60.12%), Postives = 113/163 (69.33%), Query Frame = 2
Query:   62 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            MSLIPS FG RRS+VFDPFS D+WDPF                    + +AF N RVDWKETPEAHVFKADLPGL+         D   LQISG+R+ E E+K+D WHRVER+SG F RRFRLPENAKM+ +KA+MENGVLTV VPKA E KK  V++I ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTAR---DVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPE-KKPQVKSIDISG 159          
BLAST of CB417302 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.578e-47
Identity = 99/163 (60.74%), Postives = 115/163 (70.55%), Query Frame = 2
Query:   62 MSLIPSFFGNRRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLRXXXXXXXXXDDRALQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQISG 550
            MSLIPS FG RR++VFDPFSLDV+DPF                    + +AF N +VDW+ETPEAHVFKADLPGLR         D   LQISG+R+ E E+K+D WHRVERSSG F+RRFRLPENAKM+ IKASMENGVL+VTVPK  E KK  V++I ISG
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAM-----DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPE-KKPEVKSIDISG 157          
The following BLAST results are available for this feature:
BLAST of CB417302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
HSP11_SOLPE7.311e-5365.8517.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLLC9.549e-5364.6317.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP11_DAUCA3.072e-5162.5817.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ARATH3.396e-5061.0817.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP11_HELAN1.686e-4960.7417.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP17_ARATH1.093e-4858.9017.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_MEDSA5.422e-4866.4418.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP12_DAUCA7.082e-4858.9018.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS181_ARATH9.249e-4860.1218.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH1.578e-4760.7417.6 kDa class I heat shock protein 3 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionEST0377 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P022 similar to small heat shock protein (acc# 1107298A), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417302 ID=CB417302; Name=CB417302; organism=Citrus sinensis; type=EST; length=730bp
ACTTTTTATTAGTCGATAGAGGAAAGAGAGAGGGAAAACAAAAAAAGGAA
AGATAAGGAAAATGTCGCTGATTCCAAGCTTCTTCGGCAACCGACGCAGC
AGTGTGTTCGATCCGTTCTCACTCGACGTTTGGGATCCATTCAGGGACTT
CCCTCTCTCTGCTTCTTCTTTTCCATCTGCGGTGTCCTCTCAGTTCCCTG
GAGAAGCCTCTGCTTTCGTTAATACCCGCGTGGACTGGAAGGAAACCCCA
GAGGCCCACGTGTTCAAGGCTGATCTTCCGGGGCTAAGGAAAGAGGAGGT
GAAGGTCGAGGTTGAGGATGACAGGGCGCTTCAGATAAGCGGGCAGAGGA
ACATTGAGAAGGAAGACAAGAGCGACACGTGGCATCGCGTGGAGCGTAGC
AGTGGCATGTTCTCGAGGAGGTTCAGGCTGCCGGAGAATGCGAAGATGGA
CCGCATTAAGGCTTCAATGGAGAACGGTGTGCTTACTGTTACCGTTCCTA
AAGCGGAGGAGGCCAAGAAAGCTAATGTCAGGGCTATTCAAATCTCTGGC
TGACTAATTAATAAACAAAGACAATAAATAATTGTATGATAAGTTTTATG
GTTTGGTTTGGTCTATGTATCATGTGAAGTCTGTCTTTGTCTACTGAGAT
CGAGTGTCTTTGTTTGTAATGGGAATGTCAGAATGGGAATAATAATGTAA
TTTCGTAAAAAAAAAAAAAAAAAAAAAAAA
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