CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig376 contig Csv1_Contig376:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CHLTE (Alanyl-tRNA synthetase OS=Chlorobium tepidum GN=alaS PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.804e-32
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG         + TRA +TQKCIRA GKHNDL+DVG+DTYHHTFFEMLGNWSFGDY+K EAI W WEL+T+V++LP +RLYAT +  DE++
Sbjct:   46 KDVFLGKGT-----REYTRAADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTEVWKLPKERLYATVYHDDEES 135          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_PARD8 (Alanyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=alaS PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.762e-31
Identity = 59/97 (60.82%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   48 KLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLP 338
            K  R  ++QKC+R  GKHNDL++VG DTYHHT FEMLGNWSFGDYFK EAI W WE L +V +L  +RLYAT F G    GL  DNEA   W ++LP
Sbjct:   57 KYPRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKLNPERLYATVFEGSPAEGLDRDNEAAGYWEQYLP 153          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_PROVI (Alanyl-tRNA synthetase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=alaS PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 4.913e-31
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGD--------EKAGLAPDNEAR 314
            +RA +TQKCIRA GKHNDL+DVG+DTYHHTFFEMLGNWSFGDY+K EAI W WELLT V++LP +RLYAT +  D        EK  + PD+  R
Sbjct:   58 SRAADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKLPEERLYATVYHDDDESFRIWEEKTSIRPDHILR 152          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CHLPD (Alanyl-tRNA synthetase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=alaS PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.913e-31
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGL 293
            RA +TQKCIRA GKHNDL+DVG+DTYHHTFFEMLGNWSFGDY+K EAI W WELLT V+ LP +RLYAT +  DE++ L
Sbjct:   59 RAADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWHLPKERLYATVYYDDEESYL 137          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_AKKM8 (Alanyl-tRNA synthetase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=alaS PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.417e-31
Identity = 65/108 (60.19%), Postives = 75/108 (69.44%), Query Frame = 3
Query:    6 PIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAP--DNEARDIW 323
            P FLG   P    +   RA +TQKCIRAGGKHNDL+DVG D+YHHTFFEMLGNWSFGDYFK EAI W WEL+ + +  PA+RLYAT +  D+  G     D EA D W
Sbjct:   47 PYFLGVWTPPWTPA---RATDTQKCIRAGGKHNDLEDVGYDSYHHTFFEMLGNWSFGDYFKREAIRWAWELVVERWGFPAERLYATVYAPDKSKGDPGEFDREAWDFW 151          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BACFR (Alanyl-tRNA synthetase OS=Bacteroides fragilis GN=alaS PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.381e-31
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 3
Query:   45 SKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLP 338
            +K  R  ++QKC+R  GKHNDL++VG DTYHHT FEMLGNWSFGDYFK EAI W WE L  V +L  + LYAT F G  + GL  DNEA   W ++LP
Sbjct:   56 AKYHRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKLNPEHLYATVFEGSPEEGLERDNEAASYWEQYLP 153          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BACFN (Alanyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=alaS PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.381e-31
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 3
Query:   45 SKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLP 338
            +K  R  ++QKC+R  GKHNDL++VG DTYHHT FEMLGNWSFGDYFK EAI W WE L  V +L  + LYAT F G  + GL  DNEA   W ++LP
Sbjct:   56 AKYHRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKLNPEHLYATVFEGSPEEGLERDNEAASYWEQYLP 153          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BACTN (Alanyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=alaS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 57/98 (58.16%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   45 SKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLP 338
            +K  R  ++QKC+R  GKHNDL++VG DTYHHT FEMLGNWSFGDYFK EAI W WE L +V +L  + LYAT F G  + GL+ D+EA   W ++LP
Sbjct:   56 AKYHRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKLNPEHLYATVFEGSPEEGLSRDDEAASYWEQYLP 153          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BACV8 (Alanyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=alaS PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.439e-30
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 3
Query:   45 SKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLP 338
            +K  R  ++QKC+R  GKHNDL++VG DTYHHT FEMLGNWSFGDYFK EAI W WE L  V ++    LYAT F G  + GL  DNEA   W +FLP
Sbjct:   55 AKYKRVADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKIDPKDLYATVFEGSPEEGLERDNEAASYWEQFLP 152          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_SYNFM (Alanyl-tRNA synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=alaS PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.185e-30
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            RA  +QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFGDYFK +A+E+ W  LT+   LP ++LYAT   GD +  L PD EAR  W ++LPA R
Sbjct:   59 RAATSQKCMRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAVEYAWRFLTEDMGLPREKLYATIHEGDSEMRLGPDEEARGFWARYLPADR 155          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_CHLTE5.804e-3264.21Alanyl-tRNA synthetase OS=Chlorobium tepidum GN=al... [more]
SYA_PARD83.762e-3160.82Alanyl-tRNA synthetase OS=Parabacteroides distason... [more]
SYA_PROVI4.913e-3164.21Alanyl-tRNA synthetase OS=Prosthecochloris vibriof... [more]
SYA_CHLPD4.913e-3173.42Alanyl-tRNA synthetase OS=Chlorobium phaeobacteroi... [more]
SYA_AKKM86.417e-3160.19Alanyl-tRNA synthetase OS=Akkermansia muciniphila ... [more]
SYA_BACFR8.381e-3159.18Alanyl-tRNA synthetase OS=Bacteroides fragilis GN=... [more]
SYA_BACFN8.381e-3159.18Alanyl-tRNA synthetase OS=Bacteroides fragilis (st... [more]
SYA_BACTN1.095e-3058.16Alanyl-tRNA synthetase OS=Bacteroides thetaiotaomi... [more]
SYA_BACV82.439e-3059.18Alanyl-tRNA synthetase OS=Bacteroides vulgatus (st... [more]
SYA_SYNFM3.185e-3058.76Alanyl-tRNA synthetase OS=Syntrophobacter fumaroxi... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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