CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig376 contig Csv1_Contig376:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_CHLCH (Alanyl-tRNA synthetase OS=Chlorobium chlorochromatii (strain CaD3) GN=alaS PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.266e-30
Identity = 55/77 (71.43%), Postives = 66/77 (85.71%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            RA +TQKCIRA GKHNDL+DVG+DTYHHTFFEMLGNWSFGDY+K EAI W WEL T V++LP +RLYAT +  D+++
Sbjct:   59 RAADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKLEAITWAWELFTVVWKLPKERLYATVYQDDDES 135          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_VEREI (Alanyl-tRNA synthetase OS=Verminephrobacter eiseniae (strain EF01-2) GN=alaS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.696e-29
Identity = 61/109 (55.96%), Postives = 75/109 (68.81%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT          +RA + Q C+RAGGKHNDL++VG    HHTFFEMLGNWSFGDYFK E+++W WELLT+VYRLPA+RL AT +          D+EA DIW +
Sbjct:   49 KDVFLGT-----DKRPYSRAVSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLQWAWELLTEVYRLPAERLLATVY--------QDDDEAYDIWTR 144          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_POLSJ (Alanyl-tRNA synthetase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=alaS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.696e-29
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT           RA + Q C+RAGGKHNDL++VG    HHTFFEMLGNWSFGDYFK E+++W WELLT VY+LPAD+L+AT +          D+EA DIW K
Sbjct:   55 KDVFLGT-----DKRSYVRAASVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTDVYKLPADKLWATVY--------IDDDEAYDIWTK 150          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ACISJ (Alanyl-tRNA synthetase OS=Acidovorax sp. (strain JS42) GN=alaS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT           RA + Q C+RAGGKHNDL++VG    HHTFFEMLGNWSFGDYFK E+++W WELLT+VY+LP +RL AT +        A D+EA DIW K
Sbjct:   51 KDVFLGT-----DKRPYVRATSVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPPERLLATVY--------AEDDEAYDIWTK 146          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_RALSO (Alanyl-tRNA synthetase OS=Ralstonia solanacearum GN=alaS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.844e-29
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 335
            K +FLGT           RA + Q+C+RAGGKHNDL++VG    HHTFFEMLGNWSFGDYFK +A+ W WELLT+ Y+LPAD+L+AT +          D+EA DIW K +
Sbjct:   46 KDVFLGT-----DKRPYVRAASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPADKLWATVY--------QTDDEAYDIWTKVI 143          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_DELAS (Alanyl-tRNA synthetase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=alaS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.844e-29
Identity = 61/109 (55.96%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT           RA + Q C+RAGGKHNDL++VG    HHTFFEMLGNWSFGDYFK E+++W WELLT+VY+LP +RL AT +        A D+EA DIW K
Sbjct:   51 KDVFLGT-----DKRPYKRATSVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPKERLLATVY--------AEDDEAYDIWTK 146          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_RHOFD (Alanyl-tRNA synthetase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=alaS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.748e-28
Identity = 60/112 (53.57%), Postives = 76/112 (67.86%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA--------GLAPDNEAR 314
            K +FLGT           RA + Q C+RAGGKHNDL++VG    HHTFFEMLGNWSFGDYFK ++++W WELLTKVY+LPAD+L+AT +  D++A        GL P+   R
Sbjct:   53 KDVFLGT-----DKRSYVRAASVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWGWELLTKVYKLPADKLWATVYIDDDEAYNIWTQEIGLPPERVVR 159          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_POLNA (Alanyl-tRNA synthetase OS=Polaromonas naphthalenivorans (strain CJ2) GN=alaS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.282e-28
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLG            RA + Q C+RAGGKHNDL++VG    HHTFFEMLGNWSFGDYFK E+++W WELLT+VY+LPA+RL AT +          D+EA DIW K
Sbjct:   51 KDVFLGV-----DKRPYVRATSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPAERLLATVY--------EEDDEAYDIWTK 146          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XANCP (Alanyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris GN=alaS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.893e-28
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG      +     RA + Q+C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK +AI W WELLT+V++LPADRL  T +  DE+A
Sbjct:   52 KDVFLGA-----EKRSYVRAADVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPADRLLVTVYHTDEEA 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XANCB (Alanyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain B100) GN=alaS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.893e-28
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG      +     RA + Q+C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK +AI W WELLT+V++LPADRL  T +  DE+A
Sbjct:   52 KDVFLGA-----EKRSYVRAADVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPADRLLVTVYHTDEEA 141          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_CHLCH9.266e-3071.43Alanyl-tRNA synthetase OS=Chlorobium chlorochromat... [more]
SYA_VEREI2.696e-2955.96Alanyl-tRNA synthetase OS=Verminephrobacter eiseni... [more]
SYA_POLSJ2.696e-2955.96Alanyl-tRNA synthetase OS=Polaromonas sp. (strain ... [more]
SYA_ACISJ6.006e-2955.96Alanyl-tRNA synthetase OS=Acidovorax sp. (strain J... [more]
SYA_RALSO7.844e-2954.05Alanyl-tRNA synthetase OS=Ralstonia solanacearum G... [more]
SYA_DELAS7.844e-2955.96Alanyl-tRNA synthetase OS=Delftia acidovorans (str... [more]
SYA_RHOFD1.748e-2853.57Alanyl-tRNA synthetase OS=Rhodoferax ferrireducens... [more]
SYA_POLNA2.282e-2855.05Alanyl-tRNA synthetase OS=Polaromonas naphthaleniv... [more]
SYA_XANCP3.893e-2860.00Alanyl-tRNA synthetase OS=Xanthomonas campestris p... [more]
SYA_XANCB3.893e-2860.00Alanyl-tRNA synthetase OS=Xanthomonas campestris p... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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