CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig376 contig Csv1_Contig376:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XANC8 (Alanyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=alaS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.893e-28
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG      +     RA + Q+C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK +AI W WELLT+V++LPADRL  T +  DE+A
Sbjct:   52 KDVFLGA-----EKRSYVRAADVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPADRLLVTVYHTDEEA 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XANC5 (Alanyl-tRNA synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=alaS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.893e-28
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG      +     RA + Q+C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK +AI W WELLT+V++LPADRL  T +  DE+A
Sbjct:   52 KDVFLGA-----EKRSYVRAADVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPADRLLVTVYHTDEEA 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XANAC (Alanyl-tRNA synthetase OS=Xanthomonas axonopodis pv. citri GN=alaS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.893e-28
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG      +     RA + Q+C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK +AI W WELLT+V++LPADRL  T +  DE+A
Sbjct:   52 KDVFLGA-----EKRSYVRAADVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPADRLLVTVYHTDEEA 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ACIAC (Alanyl-tRNA synthetase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=alaS PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.893e-28
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT           RA + Q C+RAGGKHNDL++VG    HHTFFEMLGNWSFGDYFK ++++W WELLT+VY LP +RL AT +        A D+EA DIW K
Sbjct:   53 KDVFLGT-----DKRPYVRATSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWAWELLTEVYGLPKERLLATVY--------AEDDEAYDIWTK 148          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_JANMA (Alanyl-tRNA synthetase OS=Janthinobacterium sp. (strain Marseille) GN=alaS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.085e-28
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLG           TRA + Q C+RAGGKHNDL++VG    HHTFFEMLGNWSFGDYFK +A++W+WELLT+VY LPA++L AT +          D+EA DIW K
Sbjct:   46 KDVFLGE-----DKRPYTRATSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALKWSWELLTQVYGLPAEKLLATVY--------IEDDEAFDIWTK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_RALME (Alanyl-tRNA synthetase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=alaS PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.641e-28
Identity = 64/117 (54.70%), Postives = 80/117 (68.38%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            K +FLGT           RA ++Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI++ WELLTKVY+LPAD+L+ T +        A D+EA DIW K   +PA R
Sbjct:   46 KDVFLGT-----DKRPYVRATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPADKLWVTVY--------AEDDEAYDIWAKEVGVPADR 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_METI4 (Alanyl-tRNA synthetase OS=Methylacidiphilum infernorum (isolate V4) GN=alaS PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.673e-28
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            R  ++QKC+RAGGKHNDL++VG DTYHHTFFEMLGNWSF DYFK EAI W WELLT+ +  P +R+YAT +          D EA  IW K    ++
Sbjct:   61 RIADSQKCLRAGGKHNDLEEVGYDTYHHTFFEMLGNWSFNDYFKEEAIHWAWELLTQKWGFPKERIYATVYKPAPDEPGEFDEEAFRIWFKLFQKAK 157          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ROSS1 (Alanyl-tRNA synthetase OS=Roseiflexus sp. (strain RS-1) GN=alaS PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.133e-27
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            TRA   QKC+R  GKHNDL++VG    HHTFFEMLGN+SFGDYFK+EAI   WELLTKV+ LP +RL+ T F GD++  + PD+EA  +W+
Sbjct:   61 TRATTVQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVFELPVERLWFTVFEGDDE--VPPDDEAAQLWV 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XANOR (Alanyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae GN=alaS PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.479e-27
Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG      +     RA + Q+C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK +AI W WELLT++++LP DRL  T +  DE+A
Sbjct:   52 KDVFLGA-----EKRSYVRAADVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQIWKLPTDRLLVTVYHTDEEA 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XANOP (Alanyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=alaS PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.479e-27
Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG      +     RA + Q+C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK +AI W WELLT++++LP DRL  T +  DE+A
Sbjct:   52 KDVFLGA-----EKRSYVRAADVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQIWKLPTDRLLVTVYHTDEEA 141          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_XANC83.893e-2860.00Alanyl-tRNA synthetase OS=Xanthomonas campestris p... [more]
SYA_XANC53.893e-2860.00Alanyl-tRNA synthetase OS=Xanthomonas campestris p... [more]
SYA_XANAC3.893e-2860.00Alanyl-tRNA synthetase OS=Xanthomonas axonopodis p... [more]
SYA_ACIAC3.893e-2855.05Alanyl-tRNA synthetase OS=Acidovorax avenae subsp.... [more]
SYA_JANMA5.085e-2855.05Alanyl-tRNA synthetase OS=Janthinobacterium sp. (s... [more]
SYA_RALME6.641e-2854.70Alanyl-tRNA synthetase OS=Ralstonia metallidurans ... [more]
SYA_METI48.673e-2856.70Alanyl-tRNA synthetase OS=Methylacidiphilum infern... [more]
SYA_ROSS11.133e-2760.44Alanyl-tRNA synthetase OS=Roseiflexus sp. (strain ... [more]
SYA_XANOR1.479e-2757.89Alanyl-tRNA synthetase OS=Xanthomonas oryzae pv. o... [more]
SYA_XANOP1.479e-2757.89Alanyl-tRNA synthetase OS=Xanthomonas oryzae pv. o... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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