CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig376 contig Csv1_Contig376:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XANOM (Alanyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=alaS PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.479e-27
Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG      +     RA + Q+C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK +AI W WELLT++++LP DRL  T +  DE+A
Sbjct:   52 KDVFLGA-----EKRSYVRAADVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQIWKLPTDRLLVTVYHTDEEA 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_HERAR (Alanyl-tRNA synthetase OS=Herminiimonas arsenicoxydans GN=alaS PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.479e-27
Identity = 60/109 (55.05%), Postives = 70/109 (64.22%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLG            RA + Q C+RAGGKHNDL++VG    HHTFFEMLGNWSFGDYFK +A+ W+WELLTKVY LP D+L AT +          D EA DIW K
Sbjct:   46 KDVFLGE-----DKRPYVRATSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALMWSWELLTKVYGLPGDKLLATVY--------IEDQEAYDIWTK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_RALEJ (Alanyl-tRNA synthetase OS=Ralstonia eutropha (strain JMP134) GN=alaS PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.932e-27
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT          +RA ++Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI++ WELLTKVY+LPA++L+ T +        A D+EA DIW K
Sbjct:   46 KDVFLGT-----DKRPYSRATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPAEKLWVTVY--------AEDDEAYDIWAK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_STRMK (Alanyl-tRNA synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=alaS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.523e-27
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG      +     RA + Q+C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK +AI W WELLT+V++LPA+RL  T +  D++A
Sbjct:   52 KDVFLGA-----EKRSYVRAADVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPAERLLVTVYQTDDEA 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ROSCS (Alanyl-tRNA synthetase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=alaS PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.304e-27
Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            TRA   QKC+R  GKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI   WELLTKV+ LP +RL+ T F GD++  + PD+EA  +W+
Sbjct:   61 TRATTAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIPMAWELLTKVFDLPVERLWFTVFEGDDE--VPPDDEAAQLWV 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_METFK (Alanyl-tRNA synthetase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=alaS PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.304e-27
Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL--PASR 347
            TRA ++QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + WELLT+V++LPAD+L  T +        A D+EA DIW + +  PA R
Sbjct:   58 TRATSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTQVFKLPADKLTVTVY--------AEDDEAYDIWTREIGVPAER 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_DECAR (Alanyl-tRNA synthetase OS=Dechloromonas aromatica (strain RCB) GN=alaS PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.252e-26
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            +RA  +QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI++ WELLT+VY+LP D+L  T +        A D+EA DIW K
Sbjct:   58 SRATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVYKLPKDKLTVTVY--------AEDDEAYDIWTK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ALHEH (Alanyl-tRNA synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=alaS PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.252e-26
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            K +FLG           TRA ++Q+C+RAGGKHNDLD+VG    HHTFFEMLGN+SFGDYFK EAIE+ WE LT+   LPA+RL+ T +          D+EA DIWL
Sbjct:   47 KDVFLGKEQRG-----YTRACSSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWEFLTRTIGLPAERLWVTVY--------EEDDEAADIWL 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_RALEH (Alanyl-tRNA synthetase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=alaS PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.636e-26
Identity = 62/117 (52.99%), Postives = 78/117 (66.67%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            K +FLGT          TRA + Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + WELLTK Y+LPA++L+ T +        A D+EA DIW K   +PA R
Sbjct:   46 KDVFLGT-----DKRPYTRATSAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILYAWELLTKTYQLPAEKLWVTVY--------AEDDEAYDIWAKEVGVPAER 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_AZOSB (Alanyl-tRNA synthetase OS=Azoarcus sp. (strain BH72) GN=alaS PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.636e-26
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            +RA  +QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK +AI + WELLT+V++LP D+L+ T +        A D+EA DIW K   +PA R
Sbjct:   58 SRATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTEVFKLPKDKLWVTVY--------AEDDEAYDIWTKEVGVPAER 149          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_XANOM1.479e-2757.89Alanyl-tRNA synthetase OS=Xanthomonas oryzae pv. o... [more]
SYA_HERAR1.479e-2755.05Alanyl-tRNA synthetase OS=Herminiimonas arsenicoxy... [more]
SYA_RALEJ1.932e-2755.05Alanyl-tRNA synthetase OS=Ralstonia eutropha (stra... [more]
SYA_STRMK2.523e-2757.89Alanyl-tRNA synthetase OS=Stenotrophomonas maltoph... [more]
SYA_ROSCS4.304e-2760.44Alanyl-tRNA synthetase OS=Roseiflexus castenholzii... [more]
SYA_METFK4.304e-2758.00Alanyl-tRNA synthetase OS=Methylobacillus flagella... [more]
SYA_DECAR1.252e-2659.78Alanyl-tRNA synthetase OS=Dechloromonas aromatica ... [more]
SYA_ALHEH1.252e-2654.63Alanyl-tRNA synthetase OS=Alkalilimnicola ehrliche... [more]
SYA_RALEH1.636e-2652.99Alanyl-tRNA synthetase OS=Ralstonia eutropha (stra... [more]
SYA_AZOSB1.636e-2657.00Alanyl-tRNA synthetase OS=Azoarcus sp. (strain BH7... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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