CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig376 contig Csv1_Contig376:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_LEPCP (Alanyl-tRNA synthetase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=alaS PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.060e-25
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 347
            +RA  +QKCIRAGGKHNDLD+VG    HHTFFEMLGN+SFGDYFK++AI + WELLT+ ++LP D+L+ T +        + D+EA +IW K   +PA R
Sbjct:   58 SRATTSQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTEHFKLPKDKLWVTVY--------SEDDEAYEIWNKVVGVPAER 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BORPE (Alanyl-tRNA synthetase OS=Bordetella pertussis GN=alaS PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.060e-25
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 3
Query:   57 RAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASR 347
            RA ++Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI++ WELLT+VY+LPA++L+ T +          D+EA DIW K   +PA R
Sbjct:   59 RATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYKLPAEKLWVTVY--------QEDDEAYDIWAKEVGVPAER 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_PSEA6 (Alanyl-tRNA synthetase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.385e-25
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            K +FLGT     +  K TRA ++Q+C+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK++AI + W  LT+V +LP D+L  T +        + D+EA DIW
Sbjct:   48 KDVFLGT-----EQRKYTRATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHQAIGYAWSFLTEVLKLPKDKLLVTVY--------SEDDEAFDIW 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_NITOC (Alanyl-tRNA synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.385e-25
Identity = 58/114 (50.88%), Postives = 76/114 (66.67%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPAS 344
            K +FLG      ++    RA + Q+C+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK EAI + WELLT+V +LP +RL+ T F          D+EA +IWL+ +  S
Sbjct:   47 KEVFLGR-----EVRAYHRAASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKLPPERLWVTVF--------KEDDEAANIWLQEIGVS 147          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_GEOMG (Alanyl-tRNA synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.385e-25
Identity = 59/107 (55.14%), Postives = 69/107 (64.49%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            K  FLG  D        TRA ++QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFGDYFK EAI + WE LTK   L  DRLY T +          D+EA DIW
Sbjct:   46 KDCFLGMEDRG-----YTRATSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLDKDRLYVTVY--------TDDDEAADIW 139          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_AZOSE (Alanyl-tRNA synthetase OS=Azoarcus sp. (strain EbN1) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.385e-25
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:   54 TRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL--PASR 347
            +RA  +QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK++AI + WELLT+ + LP D+L+ T +        A D+EA DIW K +  PA R
Sbjct:   58 SRATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWELLTEEFGLPKDKLWVTVY--------ADDDEAYDIWTKEIGVPAER 149          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_GEOUR (Alanyl-tRNA synthetase OS=Geobacter uraniireducens (strain Rf4) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.808e-25
Identity = 57/107 (53.27%), Postives = 70/107 (65.42%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            K +FLG      +     RA ++QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFGDYFK EAI + WE LTK  +L  DRLY T +          D+EA DIW
Sbjct:   46 KDVFLGL-----EKRDYVRACSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKELKLDKDRLYVTVY--------TDDDEAADIW 139          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_BURM1 (Alanyl-tRNA synthetase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.808e-25
Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 329
            K +FLGT          TRA   Q+ +RAGGKHNDL++VG    HHTFFEMLGN+SFGDYFK++AI + WELLT VY LP D+L+ T +          D+EA DIW K
Sbjct:   46 KDVFLGT-----DRRPYTRATTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLPKDKLWVTVY--------QEDDEAYDIWAK 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XYLFT (Alanyl-tRNA synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.362e-25
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG A+  +++    R  + Q C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK EAI W WELLT+V+ LP +RL  T +  D+++
Sbjct:   52 KDVFLG-AEKRSEV----RVADVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIMWAWELLTQVWELPPERLLVTVYHTDDES 141          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_XYLF2 (Alanyl-tRNA synthetase OS=Xylella fastidiosa (strain M23) GN=alaS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.362e-25
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKA 287
            K +FLG A+  +++    R  + Q C+RAGGKHNDLD VG    HHTFFEMLGNWSFGDYFK EAI W WELLT+V+ LP +RL  T +  D+++
Sbjct:   52 KDVFLG-AEKRSEV----RVADVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIMWAWELLTQVWELPPERLLVTVYHTDDES 141          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_LEPCP1.060e-2556.00Alanyl-tRNA synthetase OS=Leptothrix cholodnii (st... [more]
SYA_BORPE1.060e-2556.57Alanyl-tRNA synthetase OS=Bordetella pertussis GN=... [more]
SYA_PSEA61.385e-2552.34Alanyl-tRNA synthetase OS=Pseudoalteromonas atlant... [more]
SYA_NITOC1.385e-2550.88Alanyl-tRNA synthetase OS=Nitrosococcus oceani (st... [more]
SYA_GEOMG1.385e-2555.14Alanyl-tRNA synthetase OS=Geobacter metallireducen... [more]
SYA_AZOSE1.385e-2556.00Alanyl-tRNA synthetase OS=Azoarcus sp. (strain EbN... [more]
SYA_GEOUR1.808e-2553.27Alanyl-tRNA synthetase OS=Geobacter uraniireducens... [more]
SYA_BURM11.808e-2553.21Alanyl-tRNA synthetase OS=Burkholderia multivorans... [more]
SYA_XYLFT2.362e-2556.84Alanyl-tRNA synthetase OS=Xylella fastidiosa (stra... [more]
SYA_XYLF22.362e-2556.84Alanyl-tRNA synthetase OS=Xylella fastidiosa (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
back to top