CB417305

Overview
NameCB417305
Unique NameCB417305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig377 contig Csv1_Contig377:1..328. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK50_ARATH (Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPS 152
            G+K VKNSPHPR+YY+C+  GC VKKRVER  +DP+ V+TTYEG H H S
Sbjct:  122 GKKMVKNSPHPRNYYKCSVDGCPVKKRVERDRDDPSFVITTYEGSHNHSS 171          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.128e-14
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIH 146
            GQK VKN+ HPRSYYRCT   C VKKRVER ++DP +V+TTYEG+H+H
Sbjct:  232 GQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.283e-14
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHP 149
            GQK+VKN+ HPRSYYRCT   C VKK+V+R ++DP +VVTTYEG H HP
Sbjct:  123 GQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHP 171          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.283e-14
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSI 176
            GQK VK +P+PRSYY+CT  GC V+K VER+ +DP  V+TTYEG+H H  P   RG +
Sbjct:  243 GQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPRRGPV 300          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGS 173
            GQK V+ +P+PRSYY+CT+ GC V+K VER+S DP  V+TTYEG+H H  P +   S
Sbjct:  390 GQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSSS 446          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.313e-14
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIH 146
            GQK VKNS HPRSYYRCT   C VKKRVER SED  +V+TTYEG+H H
Sbjct:  154 GQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.552e-14
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMA 188
            GQK VK +PHPRSYY+CT+  C V+K VER+S D   V+TTYEG+H H  P    G+    A
Sbjct:  315 GQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTAAATA 376          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHP 149
            GQK+VK++ HPRSYYRCT   C VKK+V+R ++DP +VVTTYEG H HP
Sbjct:  107 GQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHP 155          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.128e-13
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSS 230
            GQK VK +P+PRSYY+CT+ GC V+K VER+S D   V+TTYEG+H H  P     S G   +  N  +   A+ S
Sbjct:  496 GQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHGGGGDSGNGNSGGSAAVS 571          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.128e-13
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHP 149
            GQKAVKN+  PRSYYRCT  GC VKK+V+R + D  +VVTTYEG H HP
Sbjct:   76 GQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHP 124          
The following BLAST results are available for this feature:
BLAST of CB417305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
WRK50_ARATH1.128e-1466.00Probable WRKY transcription factor 50 OS=Arabidops... [more]
WRK13_ARATH1.128e-1468.75Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK56_ARATH3.283e-1467.35Probable WRKY transcription factor 56 OS=Arabidops... [more]
WRK26_ARATH3.283e-1456.90Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK20_ARATH7.313e-1456.14Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRK12_ARATH7.313e-1472.92Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK58_ARATH9.552e-1453.23Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK24_ARATH1.247e-1365.31Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRKY2_ARATH2.128e-1347.37Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK75_ARATH2.128e-1367.35Probable WRKY transcription factor 75 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionEST0381 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P026 similar to unknown Arabidopsis protein (acc# AAM14163), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417305 ID=CB417305; Name=CB417305; organism=Citrus sinensis; type=EST; length=328bp
ACGGCCAAAAAGCTGTCAAAAATAGCCCCCATCCGAGAAGCTACTATCGT
TGCACTAGTGCCGGCTGCGGAGTGAAGAAGCGAGTGGAGAGATCATCTGA
AGACCCAACGATTGTTGTAACAACGTATGAAGGACAACACATACATCCAA
GCCCGATAACGCCTCGAGGGAGTATTGGAATCATGGCCAATGATCATAAT
TCGACTGCTACTTTTGGTGCTTCATCATCCTTTGTGATTCCGCAGCCTCA
ATATCTTCAACTACATCACCAACAGCAACCCTACATATATAGTTCATCGC
CTCCGTTGAATCTAATTACTTCTAATGC
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