CB417305

Overview
NameCB417305
Unique NameCB417305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig377 contig Csv1_Contig377:1..328. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGS 173
            GQK VK +P+PRSYY+CT+ GC V+K VER+S D   V+TTYEG+H H  P   RGS
Sbjct:  371 GQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVP-AARGS 426          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGS 173
            GQK VK + +PRSYY+CT  GCGVKK+VERS+ D   V+TTYEG+H H  P   R S
Sbjct:  337 GQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTALRRS 393          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK65_ARATH (Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSPIT 161
            GQK +K SP+PR YYRC+S  GC  +K+VERS +DPT+++ TY  +H HP P+T
Sbjct:   83 GQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHPWPLT 136          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK27_ARATH (Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.379e-12
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSI 176
            GQK +K SP+PR+YYRC+S+ GC  +K+VERS+ DP I + TY G+H HP P T R S+
Sbjct:  174 GQKPIKGSPYPRNYYRCSSSKGCLARKQVERSNLDPNIFIVTYTGEHTHPRP-THRNSL 231          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.801e-12
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIH 146
            GQKAVKN+P PRSYY+CT  GC VKK+V+R   D  +VVTTY+G H H
Sbjct:   74 GQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHTH 121          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.801e-12
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSP 155
            GQK  K +P PR+YYRCT A GC V+K+V+R +ED TI++TTYEG H HP P
Sbjct:  301 GQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLP 352          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK10_ARATH (Probable WRKY transcription factor 10 OS=Arabidopsis thaliana GN=WRKY10 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.801e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGS 173
            GQK VK +P+PRSY++CT+  C VKK VER +++  +VVTTY+G H HPSP   R +
Sbjct:  316 GQKVVKGNPNPRSYFKCTNIECRVKKHVERGADNIKLVVTTYDGIHNHPSPPARRSN 372          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.353e-12
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGS 173
            GQK V  + +PRSYYRCTSA C  +K VER+S+DP   +TTYEG+H H   ++P  S
Sbjct:  358 GQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHHLLLSPPSS 414          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.073e-12
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSP 155
            GQK  K +P PR+YYRCT A GC V+K+V+R +ED TI+ TTYEG H HP P
Sbjct:  248 GQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLP 299          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.073e-12
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPI 158
            GQK VK +PHPR+YYRCTSAGC V+K +E + E+   V+ TY+G H H  P+
Sbjct:  340 GQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVENTKAVIITYKGVHNHDMPV 391          
The following BLAST results are available for this feature:
BLAST of CB417305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
WRK33_ARATH2.779e-1359.65Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRK25_ARATH2.779e-1359.65Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRK65_ARATH1.056e-1255.56Probable WRKY transcription factor 65 OS=Arabidops... [more]
WRK27_ARATH1.379e-1255.93Probable WRKY transcription factor 27 OS=Arabidops... [more]
WRK45_ARATH1.801e-1264.58Probable WRKY transcription factor 45 OS=Arabidops... [more]
WRK42_ARATH1.801e-1261.54Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRK10_ARATH1.801e-1254.39Probable WRKY transcription factor 10 OS=Arabidops... [more]
WRK44_ARATH2.353e-1254.39WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRK47_ARATH3.073e-1261.54Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK32_ARATH3.073e-1255.77Probable WRKY transcription factor 32 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionEST0381 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P026 similar to unknown Arabidopsis protein (acc# AAM14163), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417305 ID=CB417305; Name=CB417305; organism=Citrus sinensis; type=EST; length=328bp
ACGGCCAAAAAGCTGTCAAAAATAGCCCCCATCCGAGAAGCTACTATCGT
TGCACTAGTGCCGGCTGCGGAGTGAAGAAGCGAGTGGAGAGATCATCTGA
AGACCCAACGATTGTTGTAACAACGTATGAAGGACAACACATACATCCAA
GCCCGATAACGCCTCGAGGGAGTATTGGAATCATGGCCAATGATCATAAT
TCGACTGCTACTTTTGGTGCTTCATCATCCTTTGTGATTCCGCAGCCTCA
ATATCTTCAACTACATCACCAACAGCAACCCTACATATATAGTTCATCGC
CTCCGTTGAATCTAATTACTTCTAATGC
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