CB417305

Overview
NameCB417305
Unique NameCB417305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig377 contig Csv1_Contig377:1..328. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.013e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCT-SAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATF---GASSS 230
            GQK  K +P PR+YYRCT +A C V+K+V+R SED +I+++TYEG H HP P+    S   MA+  ++ A+    GASSS
Sbjct:  200 GQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSILISTYEGTHNHPLPM----SATAMASATSAAASMLLSGASSS 275          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.013e-12
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHP 149
            GQK+VKNS +PRSYYRCT   C VKK+V+R S++ +IV TTYEG H HP
Sbjct:   39 GQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLSKETSIVETTYEGIHNHP 87          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.241e-12
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSP 155
            GQK  K +P PR+YYRCT A GC V+K+V+R +ED +I++TTYEG H HP P
Sbjct:  321 GQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLP 372          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK35_ARATH (Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.241e-12
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSS 230
            GQK +K SP+PR YYRC+S+ GC  +K+VERS  DP ++V TY  +H HP P       G   +  +S+    + SS
Sbjct:  224 GQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSSSSSSLNPSSKSS 300          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.241e-12
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPI-------------TPRGSIGIMANDHN 200
            GQK VK +P+PRSYY+CT+ GC V K VER+S+D   V+TTY G+H H  P              T +GS+    ++HN
Sbjct:  381 GQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAARNSSHVGAGSSGTLQGSLATQTHNHN 459          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.241e-12
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAG-CGVKKRVERSSEDPTIVVTTYEGQHIHPSP 155
            GQK  K +P PR+YYRCT AG C V+K+V+R +ED +I++TTYEG H HP P
Sbjct:  306 GQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLP 357          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK14_ARATH (Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.241e-12
Identity = 38/108 (35.19%), Postives = 53/108 (49.07%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFVXXXXXXXXXXXXXXXXXXSSSPPLNLITS 323
            GQK +K SP PR YYRC+S+ GC  +K+VERS  DP ++V TY  +H HP PI      G   +  +S++    S                      S++PP  L +S
Sbjct:  226 GQKPIKGSPFPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPIQRNALAGSTRSSTSSSSNPNPSKPSTANVNSSSIGSQNTIYLPSSTTPPPTLSSS 333          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.845e-12
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSPI 158
            GQK  K +P PR+YYRCT A GC V+K+V+R  ED +I++TTYEG H HP P+
Sbjct:  244 GQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPV 296          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK51_ARATH (Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.940e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNS 203
            G+K+VKN+ + R+YY+C+S GC VKKRVER  +D   V+TTYEG H H S      +  +++ DH++
Sbjct:  119 GKKSVKNNINKRNYYKCSSEGCSVKKRVERDGDDAAYVITTYEGVHNHESLSNVYYNEMVLSYDHDN 185          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK59_ARATH (Probable WRKY transcription factor 59 OS=Arabidopsis thaliana GN=WRKY59 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSP 155
            G+K +  SP PR Y++C+S  C VKK++ER + +P  ++TTYEG+H HPSP
Sbjct:  118 GKKPITGSPFPRHYHKCSSPDCNVKKKIERDTNNPDYILTTYEGRHNHPSP 168          
The following BLAST results are available for this feature:
BLAST of CB417305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
WRK61_ARATH4.013e-1248.75Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRK43_ARATH4.013e-1265.31Probable WRKY transcription factor 43 OS=Arabidops... [more]
WRKY6_ARATH5.241e-1259.62WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK35_ARATH5.241e-1242.86Probable WRKY transcription factor 35 OS=Arabidops... [more]
WRK34_ARATH5.241e-1244.30Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK31_ARATH5.241e-1259.62Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK14_ARATH5.241e-1235.19Probable WRKY transcription factor 14 OS=Arabidops... [more]
WRKY9_ARATH6.845e-1258.49Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK51_ARATH8.940e-1246.27Probable WRKY transcription factor 51 OS=Arabidops... [more]
WRK59_ARATH1.168e-1150.98Probable WRKY transcription factor 59 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionEST0381 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P026 similar to unknown Arabidopsis protein (acc# AAM14163), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417305 ID=CB417305; Name=CB417305; organism=Citrus sinensis; type=EST; length=328bp
ACGGCCAAAAAGCTGTCAAAAATAGCCCCCATCCGAGAAGCTACTATCGT
TGCACTAGTGCCGGCTGCGGAGTGAAGAAGCGAGTGGAGAGATCATCTGA
AGACCCAACGATTGTTGTAACAACGTATGAAGGACAACACATACATCCAA
GCCCGATAACGCCTCGAGGGAGTATTGGAATCATGGCCAATGATCATAAT
TCGACTGCTACTTTTGGTGCTTCATCATCCTTTGTGATTCCGCAGCCTCA
ATATCTTCAACTACATCACCAACAGCAACCCTACATATATAGTTCATCGC
CTCCGTTGAATCTAATTACTTCTAATGC
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