CB417305

Overview
NameCB417305
Unique NameCB417305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig377 contig Csv1_Contig377:1..328. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.601e-11
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATF---GASSS 230
            GQK  K +P PR+YYRCT A GC V+K+V+R ++D +I++TTYEG H H  P+    S   MA+  ++ A+    G+SSS
Sbjct:  236 GQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLPL----SATTMASTTSAAASMLLSGSSSS 311          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK22_ARATH (WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.601e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRC-TSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSI 176
            GQK +K SP+PR YYRC TS GC  +K+VER+  DP + + TY  +H HP+P T R S+
Sbjct:  137 GQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNHPAP-THRNSL 194          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.601e-11
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSP 155
            GQK +K+SP+PRSYYRC S+ GC  +K+VERS  DP + V TY  +H HP P
Sbjct: 1189 GQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNHPFP 1240          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.795e-11
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIH 146
            GQK +K SPHPR YY+C+S  GC  +K VER  +DP++++ TYEG H H
Sbjct:  341 GQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNH 389          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.795e-11
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIH 146
            GQK++KNSP+PRSYY+CT+  C  KK+VERS ++    + TYEG H H
Sbjct:  123 GQKSIKNSPNPRSYYKCTNPICNAKKQVERSIDESNTYIITYEGFHFH 170          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.795e-11
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRG 170
            GQK  +++P PR+Y+RC+ A  C VKK+V+RS+EDP+++V TYEG H H  P    G
Sbjct:  185 GQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHLGPNASEG 241          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.795e-11
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRC-TSAGCGVKKRVERSSEDPTIVVTTYEGQHIH 146
            GQK +K SPHPR YY+C T  GC  +K VER+ +DP +++ TYEG+H H
Sbjct:  255 GQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRH 303          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.568e-11
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHPSP 155
            GQK  +++P PR+Y++C  A  C VKK+V+RS ED +++V TYEG+H HP P
Sbjct:  155 GQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPMP 206          
BLAST of CB417305 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.884e-11
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:    3 GQKAVKNSPHPRSYYRCTSA-GCGVKKRVERSSEDPTIVVTTYEGQHIHP 149
            GQK +K SP+PR YY+C+S  GC  +K VER  EDP +++ TYE +H HP
Sbjct:  322 GQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHP 371          
The following BLAST results are available for this feature:
BLAST of CB417305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
WRK72_ARATH2.601e-1146.25Probable WRKY transcription factor 72 OS=Arabidops... [more]
WRK22_ARATH2.601e-1152.54WRKY transcription factor 22 OS=Arabidopsis thalia... [more]
WRK16_ARATH2.601e-1157.69Probable WRKY transcription factor 16 OS=Arabidops... [more]
WRKY1_MAIZE5.795e-1155.10Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK49_ARATH5.795e-1156.25Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRK18_ARATH5.795e-1150.88WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK11_ARATH5.795e-1155.10Probable WRKY transcription factor 11 OS=Arabidops... [more]
WRK40_ARATH7.568e-1151.92Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRK21_ARATH9.884e-1154.00Probable WRKY transcription factor 21 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0381 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P026 similar to unknown Arabidopsis protein (acc# AAM14163), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417305 ID=CB417305; Name=CB417305; organism=Citrus sinensis; type=EST; length=328bp
ACGGCCAAAAAGCTGTCAAAAATAGCCCCCATCCGAGAAGCTACTATCGT
TGCACTAGTGCCGGCTGCGGAGTGAAGAAGCGAGTGGAGAGATCATCTGA
AGACCCAACGATTGTTGTAACAACGTATGAAGGACAACACATACATCCAA
GCCCGATAACGCCTCGAGGGAGTATTGGAATCATGGCCAATGATCATAAT
TCGACTGCTACTTTTGGTGCTTCATCATCCTTTGTGATTCCGCAGCCTCA
ATATCTTCAACTACATCACCAACAGCAACCCTACATATATAGTTCATCGC
CTCCGTTGAATCTAATTACTTCTAATGC
back to top