CB417306

Overview
NameCB417306
Unique NameCB417306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.217e-20
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 3
Query:  102 QMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            ++DWKETP  HV  +D+PGL K+D+ ++V  +R+L +S ERK+E + KGD WH  ER + G F RQF+LP +V +D ++A M +G
Sbjct:   76 RVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSY-GKFWRQFKLPQNVDLDSVKAKMENG 159          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.898e-20
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   51 LPVGISSLVHPYGGIDTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            +P G+            ++DWKETP  HV  +D+PGL +E++ ++V  +R+L +S ERK+E E KGD WH  ER + G F RQFRLP +V +D ++A + +G
Sbjct:   51 IPFGVDKDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSY-GKFWRQFRLPQNVDLDSVKAKLENG 151          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.421e-17
Identity = 38/85 (44.71%), Postives = 59/85 (69.41%), Query Frame = 3
Query:  102 QMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            ++DWKET   H   +D+PGL K++V ++V  + +L +S ERK E E KGD+WH  ER + G F RQF+LPD+V ++ ++A + +G
Sbjct:   72 RVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSY-GKFWRQFKLPDNVDMESVKAKLENG 155          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.051e-16
Identity = 46/102 (45.10%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  105 MDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHI----------------SAERKEEPEDKGDKWHCRERPHG--GSFTRQFRLPDDVKVDEIRASMRDG 356
            MDW+ETP AHVFE+DLPGLAK+ V ++V    IL +                 A  +EE E+ G +WHCRER  G   +   QFRLP+D   DE  A M DG
Sbjct:   29 MDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADG 130          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.599e-15
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  102 QMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDK----GDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            ++DW+ET  AH   +D+PG+ KED+ ++V  +R+L IS ER+ E   +    GD WH  ER + G F RQ RLPD+  +D I AS+ +G
Sbjct:   77 RVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSY-GRFWRQLRLPDNADLDSIAASLDNG 164          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.470e-14
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 3
Query:   96 DTQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKG---DKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            + ++DWKETP AHVF  DLPG+ K+   ++V    +L IS ER  E +  G   ++WH  ER   G F R+FRLP   +VD++ ASM +G
Sbjct:   39 NVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVER-SSGKFQRRFRLPRGARVDQVSASMDNG 127          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.277e-14
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  105 MDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            MDWKET  AHVF  D+PG+ +E+V ++V  +++L IS +R    E+KG++WH  ER     F R  RLP +   D + A++ +G
Sbjct:   72 MDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVER-SSERFVRTVRLPPNANTDGVHAALDNG 154          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.347e-12
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 3
Query:   99 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            T  D KE P+++VF +D+PGL   D+ +QV  D +L IS ERK E E +G K+   ER   G F R+F LP++   D I A  +DG
Sbjct:   46 TPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMER-RVGKFMRKFSLPENANTDAISAVCQDG 130          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.347e-12
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  108 DWKETPHAHVFEIDLPGLAKEDVTLQV-HGDRILHISAERK-------EEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            DWKETP AHV  +D+PG+ + DV ++V    R+L +S ER+       EE E  G +WH  ER   G F R+FR+P    V  + A + DG
Sbjct:   75 DWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERA-AGRFWRRFRMPPGADVGRVAARLDDG 164          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 3
Query:   99 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            T  D KE P+++VF ID+PGL   D+ +QV GD +L IS ERK E E+K    + R     G   R+F LP++   ++I A  +DG
Sbjct:   45 TPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDG 130          
The following BLAST results are available for this feature:
BLAST of CB417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HSP41_PEA5.217e-2048.2422.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP41_SOYBN8.898e-2042.1622.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP22_ARATH1.421e-1744.7122.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS178_ORYSJ2.051e-1645.1017.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ6.599e-1543.8223.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS166_ORYSJ1.470e-1444.4416.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ4.277e-1441.6718.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE2.347e-1244.1917.3 kDa class II heat shock protein OS=Solanum pe... [more]
HS219_ORYSJ2.347e-1241.7621.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_IPONI4.003e-1241.8617.2 kDa class II heat shock protein OS=Ipomoea ni... [more]

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Properties
Property NameValue
Genbank descriptionEST0382 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P027 similar to 17.7 kDa heat shock protein, class I (acc# AAN64316), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417306 ID=CB417306; Name=CB417306; organism=Citrus sinensis; type=EST; length=357bp
TATATAATATAATTTAAACGAGAAACTAGAGTTGAACAAAAATGTCTCTC
CTCCCTGTTGGGATATCATCTCTCGTCCATCCATATGGAGGCATAGACAC
CCAGATGGACTGGAAAGAAACTCCACATGCCCACGTATTCGAGATCGATC
TTCCAGGGCTTGCAAAAGAGGATGTGACGCTTCAAGTTCATGGAGACAGG
ATACTTCACATAAGTGCTGAGAGGAAAGAGGAGCCAGAGGACAAAGGCGA
CAAGTGGCACTGCCGGGAGAGGCCACACGGCGGCAGCTTCACCAGGCAGT
TTCGTTTGCCTGATGATGTTAAGGTCGATGAGATTAGGGCTTCAATGCGT
GACGGGG
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