CB417306

Overview
NameCB417306
Unique NameCB417306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.003e-12
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  105 MDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHI------SAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            MDW ETP +HV  I++PGL K+DV +QV    +L +      +A  KE   +K   WH  ER     F R+  LP +V+V++IRAS+ +G
Sbjct:   32 MDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGR-PEFAREVALPAEVRVEQIRASVDNG 120          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.919e-12
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 3
Query:   99 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            T  D KE P A+ F +D+PGL   D+ +QV  +R+L +S ER+ E E + D  + R     G F R+F LPD+  VD++ A  RDG
Sbjct:   55 TPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRRE-EREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDG 139          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.919e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 3
Query:   99 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            T  D KE P+++VF +D+PGL   D+ +QV  D +L IS +R  E E +G K+   ER   G F ++F LP+D   D+I A  +DG
Sbjct:   51 TPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMER-RMGKFMKKFALPEDANTDKISAICQDG 135          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 31/88 (35.23%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  105 MDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERP----HGGSFTRQFRLPDDVKVDEIRASMRDG 356
            +DW E+ ++H+F+I++PG  KED+ +Q+    +L I  E  +E + +   WH  ER      G  F R+  LP++VKVD+++A + +G
Sbjct:   24 IDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENG 111          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.521e-11
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3
Query:   99 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            T  D KE P+++VFEID+PGL   D+ +QV  D +L I  ERK + E +G K+   ER   G   R+F LP++   D I A  +DG
Sbjct:   50 TPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMER-RVGKLMRKFVLPENANTDAISAVCQDG 134          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.987e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 3
Query:   99 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            T  D KE P A+ F +D+PGL   D+ +QV  +R+L IS ER+   E++ D  + R     G F R+F LPD+  +D+I A  RDG
Sbjct:   53 TPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRR--EEREDAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDG 136          
BLAST of CB417306 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.550e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 3
Query:   99 TQMDWKETPHAHVFEIDLPGLAKEDVTLQVHGDRILHISAERKEEPEDKGDKWHCRERPHGGSFTRQFRLPDDVKVDEIRASMRDG 356
            T  D KE   A+ F +D+PGL+  D+ +QV  +R+L IS ER+   E++ D  + R     G F R+F LPD+  VD++ A  RDG
Sbjct:   46 TPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRR--EEREDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDG 129          
The following BLAST results are available for this feature:
BLAST of CB417306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HSP16_ORYSJ4.003e-1241.1116.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HSP22_MAIZE8.919e-1241.8617.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_HELAN8.919e-1241.8617.9 kDa class II heat shock protein OS=Helianthus... [more]
HS157_ARATH1.165e-1135.2315.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP21_SOYBN1.521e-1143.0217.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_MAIZE1.987e-1141.8617.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP23_MAIZE7.550e-1140.7017.0 kDa class II heat shock protein OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionEST0382 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P027 similar to 17.7 kDa heat shock protein, class I (acc# AAN64316), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417306 ID=CB417306; Name=CB417306; organism=Citrus sinensis; type=EST; length=357bp
TATATAATATAATTTAAACGAGAAACTAGAGTTGAACAAAAATGTCTCTC
CTCCCTGTTGGGATATCATCTCTCGTCCATCCATATGGAGGCATAGACAC
CCAGATGGACTGGAAAGAAACTCCACATGCCCACGTATTCGAGATCGATC
TTCCAGGGCTTGCAAAAGAGGATGTGACGCTTCAAGTTCATGGAGACAGG
ATACTTCACATAAGTGCTGAGAGGAAAGAGGAGCCAGAGGACAAAGGCGA
CAAGTGGCACTGCCGGGAGAGGCCACACGGCGGCAGCTTCACCAGGCAGT
TTCGTTTGCCTGATGATGTTAAGGTCGATGAGATTAGGGCTTCAATGCGT
GACGGGG
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