CB417307

Overview
NameCB417307
Unique NameCB417307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2750 contig Csv1_Contig2750:362..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            +F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            +F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            +F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            +F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            +F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            +F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   32 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            +F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.309e-12
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            +F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G+ K + +K+HGF
Sbjct:   66 KFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.146e-11
Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            EF CNGTV++ PE G+V+QLQGDQR+N+  +L ++G+ K E +K+HGF
Sbjct:   63 EFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of CB417307 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.335e-11
Identity = 26/48 (54.17%), Postives = 38/48 (79.17%), Query Frame = 2
Query:    2 EFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 145
            EF CNGTV++ PE G+V+QLQGDQR+N+  +L + G+ K + +K+HGF
Sbjct:   63 EFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
The following BLAST results are available for this feature:
BLAST of CB417307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
EIF1B_MOUSE1.599e-1364.58Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA1.599e-1364.58Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN1.599e-1364.58Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_PONAB1.768e-1260.42Eukaryotic translation initiation factor 1 OS=Pong... [more]
EIF1_HUMAN1.768e-1260.42Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_CHICK1.768e-1260.42Eukaryotic translation initiation factor 1 (Fragme... [more]
EIF1_BOVIN1.768e-1260.42Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1_MOUSE2.309e-1258.33Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_ANOGA1.146e-1156.25Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME3.335e-1154.17Protein translation factor SUI1 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionEST0383 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P028 similar to SUI1, putative translation initiation factor (acc# CAD58628), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417307 ID=CB417307; Name=CB417307; organism=Citrus sinensis; type=EST; length=394bp
GGAATTTTGCTGCAATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGG
TCATTCAACTCCAAGGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTT
CAGGCTGGGATTGTGAAGAAGGAACATATCAAAATGCATGGCTTTTAAGT
AAACAGCAACTTCCGTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGC
AGTGCAGAACATGCTATTGATACTATTAAAAAAAAAAAAATTTGTATGTG
GTGGTGCTGTTATATCATCTCCTGTGTTGGTTTAATATTGTTTTATCTGT
TTTTGTGCCACTGATGTTTCCTAGTTCTCGGTTTTATGTAATGTGGGATG
ATTATGGTTATGTGATGCAGTATAGTTTGCTCGTATGTTGTAAG
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