CB417308

Overview
NameCB417308
Unique NameCB417308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13714 contig Csv1_Contig13714:413..1032. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.955e-43
Identity = 86/148 (58.11%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  120 RRTNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            RR+NVFDP SLD+WDPFD  F S +    +SD +T+ FANA IDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N K++QVKA MENG                 AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.583e-43
Identity = 85/148 (57.43%), Postives = 105/148 (70.95%), Query Frame = 3
Query:  120 RRTNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            RR+NVFDP SLD+WDPFD  F S +    +SD +T+ FANA IDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N K++QVKA +ENG                 AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43
Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFSSALTNVPSS-DRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MS+IPS FG RR+NV +P SLD+WDPF  +     +   S   +ET+ FAN  IDWKETPQAHVFKADLPGL+          G++L+ISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+N  +++VKA MENG                 +I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43
Identity = 93/157 (59.24%), Postives = 107/157 (68.15%), Query Frame = 3
Query:  120 RRTNVFDPSSLDVWDPFDGF-----FSSALTNVPSSDR----ETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            RR+NVFDP SLD+WDPFDGF      SS+ +  PS  R    ET+ FA A IDWKETP+AHVFKAD+PGL+          G IL+ISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDN K EQ+KASMENG                 +I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.466e-42
Identity = 82/135 (60.74%), Postives = 99/135 (73.33%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            MS+IPS F  +R+N+FDP SLD WDPF G  S+         RET+   NA IDWKETP+AHV KADLPG++          GR+L+ISGER +EQEEK+D WHRVERSSGKF+RRFRLP+N KM++VKA MENG
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIIST------EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENG 129          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.915e-42
Identity = 93/159 (58.49%), Postives = 108/159 (67.92%), Query Frame = 3
Query:   90 MSLIPSIFGGRR-TNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSLIP IFG RR T+VFDP S+DV+DPF       L    S+  ETS FAN  IDWKETP+AHVFKADLPGL+           R+L+ISGER+ E+E+KND WHRVERSSGKF+RRFRLP+N KM+QVKASMENG                 +IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPF-----KELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.501e-42
Identity = 86/148 (58.11%), Postives = 106/148 (71.62%), Query Frame = 3
Query:  120 RRTNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            RR+NVFDP + D WDPFDG F S +    +SDR+T+ FANA +DWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N K++QVKASMENG                 AIEISG
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVP--ATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.267e-42
Identity = 89/134 (66.42%), Postives = 100/134 (74.63%), Query Frame = 3
Query:  120 RRTNVFDPSSLDVWDPFDGF-FSSALTN----VPSSDR----ETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            RR+NVFDP SLD+WDPFDGF F S   +     PS  R    ET+ FA A IDWKETP+AHVFKAD+PGL+          G +L+ISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENG 138          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.267e-42
Identity = 87/150 (58.00%), Postives = 105/150 (70.00%), Query Frame = 3
Query:  120 RRTNVFDPSSLDVWDPFDGF-FSSALTNV-PSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            RR+NVFDP SLD+WDPFDGF F S   ++ P ++ + + FA A IDWKETP+AHVFKAD+PGL+          G +L+ISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENG                 +I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.267e-42
Identity = 89/160 (55.62%), Postives = 106/160 (66.25%), Query Frame = 3
Query:   90 MSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFSSALTNVPSSD--RETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            MSLIPSIFGG R+NVFDP SLD+WDPF  F      +VP+S    E S F N  +DWKET +AHV KAD+PGL+           R+L+ISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+N K+EQVKA MENG                  IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
The following BLAST results are available for this feature:
BLAST of CB417308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HS16B_ORYSJ2.955e-4358.1116.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ6.583e-4357.4316.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP12_DAUCA8.597e-4354.7218.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ORYSJ8.597e-4359.2417.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_HELAN1.466e-4260.7417.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP12_SOLPE1.915e-4258.4917.6 kDa class I heat shock protein OS=Solanum per... [more]
HS16C_ORYSJ2.501e-4258.1116.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS181_ORYSJ3.267e-4266.4218.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ3.267e-4258.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP15_SOYBN4.267e-4255.6317.6 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionEST0384 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P029 similar to LMW heat shock protein (acc# T46833), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417308 ID=CB417308; Name=CB417308; organism=Citrus sinensis; type=EST; length=620bp
CTCCATTCTCATCCTGAAATTGATCAAAGCATTCAAGGAAAGATTACTCC
AACTCTTGAACATTTTCTTAGCTTCATAATTTTCCAATCATGTCACTCAT
TCCAAGCATCTTCGGCGGCCGAAGAACCAACGTGTTCGATCCATCTTCAC
TAGATGTGTGGGATCCTTTTGACGGGTTCTTCTCCTCTGCCCTTACCAAT
GTGCCGTCTTCGGATAGGGAAACATCCCAATTTGCCAATGCAATAATTGA
CTGGAAAGAGACTCCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGC
TGAGGAAAGAAGAAGTGAAAGTTGAGGTTGAAGAGGGCAGGATTCTGAAG
ATAAGCGGAGAGAGGAGCAAGGAGCAAGAAGAGAAGAATGACAAGTGGCA
TCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCG
ACAATGTTAAGATGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTC
ACAGTCACTGTTCCTAAAGAGGAGGAGAAGAAACCTGAAGTTAAGGCCAT
TGAGATCTCTGGCTAAGTGATAAATGTAAATGTTTTCAAGATTGTGTCTA
TGGTTTGCCAATAAATTTGG
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