CB417308

Overview
NameCB417308
Unique NameCB417308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13714 contig Csv1_Contig13714:413..1032. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 65/151 (43.05%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  120 RRTNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQE---EKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            R  NV DP S+D W   D F +     V S         N  +DWKETP AHVF ADLPG+R          G +L ISGER++E++   + +++WH VERSSGKF RRFRLP   +++QV ASM+NG                 AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.991e-23
Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  153 DVW-----DPFDGFFSSALTNVP---SSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            D+W     DPF       L ++P     D  +   + A +DWKETP+ HV   D+PGL+           R+L++SGER KE+E+K D WHRVERS GKF R+FRLP NV ++ VKA +ENG
Sbjct:   35 DLWSDRFPDPF-----RVLEHIPFGVDKDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENG 151          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.291e-22
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 3
Query:  234 ANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            ++A +DWKETP+ HV   D+PGL+           R+L++SGER KE+++K D WHRVERS GKF R+F+LP NV ++ VKA MENG
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENG 159          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.875e-22
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 3
Query:  141 PSSL--DVW-----DPFDGFFSSALTNVPSS-DRETS-QFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            P SL  D+W     DPF       L  +P   +R+TS   + A +DWKET + H    D+PGL+            +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDNV ME VKA +ENG
Sbjct:   34 PGSLLSDLWLDRFPDPF-----KILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENG 155          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 52/129 (40.31%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  114 GGRRTNVFDPSSLDVWDPF-DGFFSSALTNVPSSDRETSQF-ANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            GG      +P S+D+ +PF D    +A    PS+    +   + A +DWKET  AHVF AD+PG+R           ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP N   + V A+++NG
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNG 154          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 46/74 (62.16%), Postives = 53/74 (71.62%), Query Frame = 3
Query:  342 ILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 563
            IL+ISGER+ E+E+KND WHRVERSSGKF+R FRLPDN K++QVKASMENG                 AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.611e-18
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  132 VFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            +FD  + D W+PF  F ++   +   +  +TS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F  RF LPD+  ++ V+ASM+ G
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADAWLAS-DTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGG 126          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.252e-16
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 3
Query:   93 SLIPSIFGG--RRTNVFDPSSLDVWDPFDGFFSSALTNVPSS-DRE-TSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            +L+P   GG  R   V +   L   DPF       L +VP   DR+  +  + A +DW+ET  AH    D+PG+R           R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDN  ++ + AS++NG
Sbjct:   28 ALLPWFGGGGARDEAVPELGLLAAADPF-----RILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNG 164          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.882e-14
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  234 ANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNVKMEQVKASMENG 494
            + A+IDW E+  +H+FK ++PG            G +L I GE  KE++++N  WH  ER +      +FLRR  LP+NVK++QVKA +ENG
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENG 111          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   84 PIMSLIPSIFGGRRTNVFDPSSLDVWDPFDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXG-RILKISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            P  +L+P  +G    + F         P  G  ++A    P++       A A  DWKETP+AHV   D+PG+R            R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P    + +V A +++G
Sbjct:   26 PAAALVPYGYGYMLDDPFRVLEQSPLRPAGGVAAAAAAGEPAA------VALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDG 164          
The following BLAST results are available for this feature:
BLAST of CB417308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HS166_ORYSJ3.629e-2543.0516.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN1.991e-2345.0822.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA1.291e-2252.8722.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH2.875e-2245.6722.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS189_ORYSJ3.179e-2140.3118.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP12_SOYBN3.290e-1862.16Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ5.611e-1839.3417.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ5.252e-1638.7323.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH2.882e-1441.3015.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HS219_ORYSJ4.916e-1433.1021.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionEST0384 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P029 similar to LMW heat shock protein (acc# T46833), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417308 ID=CB417308; Name=CB417308; organism=Citrus sinensis; type=EST; length=620bp
CTCCATTCTCATCCTGAAATTGATCAAAGCATTCAAGGAAAGATTACTCC
AACTCTTGAACATTTTCTTAGCTTCATAATTTTCCAATCATGTCACTCAT
TCCAAGCATCTTCGGCGGCCGAAGAACCAACGTGTTCGATCCATCTTCAC
TAGATGTGTGGGATCCTTTTGACGGGTTCTTCTCCTCTGCCCTTACCAAT
GTGCCGTCTTCGGATAGGGAAACATCCCAATTTGCCAATGCAATAATTGA
CTGGAAAGAGACTCCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGC
TGAGGAAAGAAGAAGTGAAAGTTGAGGTTGAAGAGGGCAGGATTCTGAAG
ATAAGCGGAGAGAGGAGCAAGGAGCAAGAAGAGAAGAATGACAAGTGGCA
TCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCG
ACAATGTTAAGATGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTC
ACAGTCACTGTTCCTAAAGAGGAGGAGAAGAAACCTGAAGTTAAGGCCAT
TGAGATCTCTGGCTAAGTGATAAATGTAAATGTTTTCAAGATTGTGTCTA
TGGTTTGCCAATAAATTTGG
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