CB417308

Overview
NameCB417308
Unique NameCB417308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13714 contig Csv1_Contig13714:413..1032. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 3
Query:  198 NVPSSD--RETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            N PS    R+    A    D KE P ++VF  D+PGL+            +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+N   + + A  ++G
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDG 130          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 3
Query:  216 RETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            R+    A    D KE P A+ F  D+PGL            R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDN  +++V A   +G
Sbjct:   47 RDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDG 139          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 42/130 (32.31%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  120 RRTNVFDP----SSLDVWDPFDGFFSSALTNVP-SSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            +RT  +DP      L  WDPF+      L N P  ++R+         + +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+ V  + V+A ++NG
Sbjct:   15 QRTREWDPFQQMQELMNWDPFE------LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNG 137          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 41/115 (35.65%), Postives = 57/115 (49.57%), Query Frame = 3
Query:  168 FDGFFSSALTNVPSSDRETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            F G F   L   P      S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP  V++EQ++AS++NG
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNG 120          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 3
Query:  216 RETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            R+    A    D KE P ++VF  D+PG++            +L ISGER +E+E++  K+ ++ER  GK +R+F LP+N  +E + A  ++G
Sbjct:   35 RDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDG 127          
BLAST of CB417308 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 31/93 (33.33%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  216 RETSQFANAIIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILKISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKMEQVKASMENG 494
            R+    A    D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++   +++ A  ++G
Sbjct:   43 RDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDG 135          
The following BLAST results are available for this feature:
BLAST of CB417308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HSP21_SOLPE6.009e-1236.6317.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP22_MAIZE1.339e-1138.7117.8 kDa class II heat shock protein OS=Zea mays P... [more]
SP21_STIAU2.284e-1132.31Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HSP16_ORYSJ2.982e-1135.6516.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HSP21_PEA8.677e-1134.4117.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN8.677e-1133.3317.9 kDa class II heat shock protein OS=Helianthus... [more]

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Properties
Property NameValue
Genbank descriptionEST0384 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P029 similar to LMW heat shock protein (acc# T46833), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417308 ID=CB417308; Name=CB417308; organism=Citrus sinensis; type=EST; length=620bp
CTCCATTCTCATCCTGAAATTGATCAAAGCATTCAAGGAAAGATTACTCC
AACTCTTGAACATTTTCTTAGCTTCATAATTTTCCAATCATGTCACTCAT
TCCAAGCATCTTCGGCGGCCGAAGAACCAACGTGTTCGATCCATCTTCAC
TAGATGTGTGGGATCCTTTTGACGGGTTCTTCTCCTCTGCCCTTACCAAT
GTGCCGTCTTCGGATAGGGAAACATCCCAATTTGCCAATGCAATAATTGA
CTGGAAAGAGACTCCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGC
TGAGGAAAGAAGAAGTGAAAGTTGAGGTTGAAGAGGGCAGGATTCTGAAG
ATAAGCGGAGAGAGGAGCAAGGAGCAAGAAGAGAAGAATGACAAGTGGCA
TCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCG
ACAATGTTAAGATGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTC
ACAGTCACTGTTCCTAAAGAGGAGGAGAAGAAACCTGAAGTTAAGGCCAT
TGAGATCTCTGGCTAAGTGATAAATGTAAATGTTTTCAAGATTGTGTCTA
TGGTTTGCCAATAAATTTGG
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