CB417310

Overview
NameCB417310
Unique NameCB417310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.761e-18
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSRGEA------------NEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            AL+WAA+E+LPTY+R+R  IL+++  EA             EVDV  LG+ ERQ  I+++ +V + DN+RFL KL+NRIDRVGI+LP VE
Sbjct:   59 ALRWAAIERLPTYSRMRTAILSSAEEEAAAAAAGAGKQQYKEVDVRRLGVGERQEFIERVFRVAEEDNQRFLQKLRNRIDRVGIELPTVE 148          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17
Identity = 41/81 (50.62%), Postives = 63/81 (77.78%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKG----ILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            LKWAA+++LPTYNRLRKG    +++  R   +EVD+  LG Q+++ L++ ++KV + DNE+FL +L+NR DRVGI++PK+E
Sbjct:   58 LKWAAIDRLPTYNRLRKGMMKEVMSNGRVVHHEVDMTKLGNQDKKVLMESILKVVEDDNEQFLRRLRNRTDRVGIEIPKIE 138          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.064e-16
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            ALKWAALEKLPT+ RLR  I+       + VDV  LG+ +RQ+ ID + KVT+ DNE+FL K +NRIDRV I LP VE
Sbjct:   39 ALKWAALEKLPTFARLRTTII---HPHEDLVDVTKLGVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVE 113          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.520e-16
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTT--------SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            ALKWAA+EKLPTY+RLR  ++          ++  + EVDV  L  ++RQ+ ID + KV + DNER L KL+NRIDRVGI LP VE
Sbjct:   52 ALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVE 137          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.597e-16
Identity = 47/87 (54.02%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSRGEAN---------EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            ALKWA++EKLPTYNRLR  ++    GE +          VDV  L  +ERQ+ ID + KV + DNER L KL+NRIDRVGI LP VE
Sbjct:   50 ALKWASIEKLPTYNRLRTSLMP-ELGEDDVYGNQILNKAVDVTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVE 135          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.842e-16
Identity = 41/81 (50.62%), Postives = 61/81 (75.31%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKGIL--TTSRGEAN--EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            L+WAALE+LPTY+RLRKG+L  T   G+    +VDV NL  +E++ L++ ++K  + DNE+FL +L+ R DRVGI++PK+E
Sbjct:   59 LRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIE 139          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.338e-15
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKGILTT------------SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            L+WAALEKLPTY+R+R+GIL              S  +A+EVD+ NL  +E + L++++ K  + DNERFL + ++R+D+VGI+LPK+E
Sbjct:   51 LRWAALEKLPTYDRMRRGILRKAVDGGGDGEGAGSLFKADEVDIANLDPREGRELMERVFKAVEDDNERFLRRFRDRLDQVGIELPKIE 139          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.635e-13
Identity = 35/81 (43.21%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKGIL--TTSRG--EANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            L+WAA+E+LPT++RLRKG+L  T++ G  E  ++D+  L  ++++ L++ ++   + DNE+FL  L+ R DRVGI++PK+E
Sbjct:   61 LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIE 141          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGIL------------TTSRGEA----NEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            AL+WAALE+LP+++RLR G++               RG       EVDV  L L +RQ  ++++  V + DNERFL KL+ RIDR GI +P VE
Sbjct:   69 ALRWAALERLPSFDRLRTGLMRADADSSGVGVGAVGRGRRWYAHREVDVRTLELAQRQAFVERVFHVAEEDNERFLKKLRARIDRAGIQMPTVE 162          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.758e-13
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            L+WAAL++LPTY+R+R+GI     GE  E+ + NL   E++ L+D+LV   + D E+F  +++ R D V +  PK+E
Sbjct:   25 LRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLEASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIE 101          
The following BLAST results are available for this feature:
BLAST of CB417310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PDR12_ORYSJ3.761e-1851.11Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
PDR2_NICPL1.429e-1750.62Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
AB29G_ARATH2.064e-1657.69ABC transporter G family member 29 OS=Arabidopsis ... [more]
AB36G_ARATH3.520e-1652.33ABC transporter G family member 36 OS=Arabidopsis ... [more]
AB35G_ARATH4.597e-1654.02ABC transporter G family member 35 OS=Arabidopsis ... [more]
AB34G_ARATH7.842e-1650.62ABC transporter G family member 34 OS=Arabidopsis ... [more]
PDR5_ORYSJ1.338e-1546.07Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
AB39G_ARATH1.635e-1343.21ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR15_ORYSJ2.789e-1343.62Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
AB32G_ARATH4.758e-1341.56ABC transporter G family member 32 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionEST0386 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P031 similar to pleiotropic drug resistance-like protein (acc# BAB92011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417310 ID=CB417310; Name=CB417310; organism=Citrus sinensis; type=EST; length=322bp
ACTAGCTTGCGTCGGAGCGCTTCTAGATGGAACACAAATTCCATCGGTGC
ATTTTCGAGGTCTTCAAGGGAAGAAGACGATGAGGAGGCTCTAAAATGGG
CTGCTCTCGAGAAATTGCCTACCTATAACCGTTTGAGGAAGGGGATATTA
ACTACCTCACGAGGTGAAGCTAATGAAGTTGATGTTTACAACCTTGGGCT
GCAAGAAAGGCAGAGGTTGATTGATAAATTGGTTAAAGTTACTGATGTTG
ATAACGAGAGGTTCTTGTTGAAGCTCAAGAACCGTATTGATAGAGTTGGA
ATAGACCTTCCAAAAGTCGAAG
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