CB417310

Overview
NameCB417310
Unique NameCB417310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   94 KWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            +WA +E+LPT+ R+   +L T    ++ +DV  L   ER+ LI+KLVK  + DN R L K++ RID VGI+LP VE
Sbjct:   33 QWATVERLPTFKRVTTALLHTGDDSSDIIDVTKLEDAERRLLIEKLVKQIEADNLRLLRKIRKRIDEVGIELPTVE 108          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.973e-12
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    1 TSLRRSASRWNTNSIGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEV------DVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            +S R  +S + +NS  +             L WAA+E+LPT++RLR  +     G    V      DV  LG  ER   I+K++K  + DN + L K++ RID+VG++LP VE
Sbjct:   26 SSFRGQSSSFRSNSALSASQKDDAVDEENMLAWAAIERLPTFDRLRSSLFEEINGNDANVKRKRVTDVTKLGALERHVFIEKMIKHIEHDNLQLLHKIRKRIDKVGVELPTVE 138          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.530e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSRGEANE-----VDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            AL+WA +E+LPT  R+R  +L        E     VDV  LG  ER  +I+KL+K  + DN + L K++ RIDRVG++LP +E
Sbjct:   58 ALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRVVDVTKLGAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIE 140          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.530e-11
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSRGEANE-----VDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            AL+WA +++LPT+ RLR   L    GE  E     VDV  LG  ER  +I+KL+K  + DN + L K++ R++RVG++ P +E
Sbjct:   24 ALQWAEIQRLPTFKRLRSS-LVDKYGEGTEKGKKVVDVTKLGAMERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIE 105          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.410e-11
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   88 ALKWAALEKL---PTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVD-NERFLLKLKNRIDRVGIDLPKVE 321
            ALK AA+EKL   PTY+R RK +L    G   E+D+ +LGL ER+ L D+++ + D D +  +L +LK+R DRV + LP +E
Sbjct:   31 ALKLAAMEKLQRLPTYDRARKAVLKGITGGFKEIDMKDLGLAERRELFDRVMTMDDEDWHGEYLRRLKSRFDRVSLHLPTIE 112          
BLAST of CB417310 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.816e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   91 LKWAALEKLPTYNRLRKGILTTSR--GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVE 321
            L+WA +E+LPT+ R+   +L      G+   +DV  L   ER+ LI+ LVK  + DN R L K++ RID+VGI+LP VE
Sbjct:   33 LQWATVERLPTFKRVTTALLARDEVSGKGRVIDVTRLEGAERRLLIEMLVKQIEDDNLRLLRKIRKRIDKVGIELPTVE 111          
The following BLAST results are available for this feature:
BLAST of CB417310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
AB41G_ARATH3.084e-1246.05ABC transporter G family member 41 OS=Arabidopsis ... [more]
PDR3_TOBAC8.973e-1235.40Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
AB37G_ARATH1.530e-1143.37ABC transporter G family member 37 OS=Arabidopsis ... [more]
AB33G_ARATH1.530e-1142.17ABC transporter G family member 33 OS=Arabidopsis ... [more]
AB38G_ARATH3.410e-1145.12ABC transporter G family member 38 OS=Arabidopsis ... [more]
AB30G_ARATH5.816e-1144.30ABC transporter G family member 30 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionEST0386 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P031 similar to pleiotropic drug resistance-like protein (acc# BAB92011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417310 ID=CB417310; Name=CB417310; organism=Citrus sinensis; type=EST; length=322bp
ACTAGCTTGCGTCGGAGCGCTTCTAGATGGAACACAAATTCCATCGGTGC
ATTTTCGAGGTCTTCAAGGGAAGAAGACGATGAGGAGGCTCTAAAATGGG
CTGCTCTCGAGAAATTGCCTACCTATAACCGTTTGAGGAAGGGGATATTA
ACTACCTCACGAGGTGAAGCTAATGAAGTTGATGTTTACAACCTTGGGCT
GCAAGAAAGGCAGAGGTTGATTGATAAATTGGTTAAAGTTACTGATGTTG
ATAACGAGAGGTTCTTGTTGAAGCTCAAGAACCGTATTGATAGAGTTGGA
ATAGACCTTCCAAAAGTCGAAG
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