CB417372

Overview
NameCB417372
Unique NameCB417372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: LLDD_ECOHS (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O9:H4 (strain HS) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   76 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA
Sbjct:  205 GNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGA 323
[Close]
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: LLDD_ECODH (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12 / DH10B) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   76 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA
Sbjct:  205 GNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGA 323
[Close]
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: LLDD_ECOBW (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12 / BW2952) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   76 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA
Sbjct:  205 GNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGA 323
[Close]
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: LLDD_ECO8A (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O8 (strain IAI1) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   76 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA
Sbjct:  205 GNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGA 323
[Close]
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: LLDD_ECO81 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O81 (strain ED1a) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   76 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA
Sbjct:  205 GNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGA 323
[Close]
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: LLDD_ECO7I (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   76 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA
Sbjct:  205 GNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGA 323
[Close]
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: LLDD_ECO5E (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   76 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA
Sbjct:  205 GNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGA 323
[Close]
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: LLDD_ECO57 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O157:H7 GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   76 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA
Sbjct:  205 GNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGA 323
[Close]
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: LLDD_ECO55 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain 55989 / EAEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   76 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA
Sbjct:  205 GNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGA 323
[Close]
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: LLDD_ECO27 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.926e-22
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   76 GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            G +S  +   TG  ++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA
Sbjct:  205 GNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGA 323
The following BLAST results are available for this feature:
BLAST of CB417372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ECOHS7.926e-2246.22L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECODH7.926e-2246.22L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOBW7.926e-2246.22L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO8A7.926e-2246.22L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO817.926e-2246.22L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO7I7.926e-2246.22L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO5E7.926e-2246.22L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO577.926e-2246.22L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO557.926e-2246.22L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO277.926e-2246.22L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionEST0457 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P163 similar to glycolate oxidase (acc# NP_188029), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417372 ID=CB417372; Name=CB417372; organism=Citrus sinensis; type=EST; length=436bp
ACAGTAAACATTGTCTTTTGAATCTCACTCAACAACATCTGCAGAATGAT
TACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCT
CTGATACAGGTTCGAATTTTGAAGCTGATGCCAACGAGACCATGGATGCT
TCTTTAAGTTGGAAGGATTTAGAATGGCTAAGATCTATTACAAACTTACC
AATTTTGATCAAGGGGATACTTACTCGTGAAGATGCAATAAAAGCTGTGG
AAGTAGGTGTTGCTGGGATTATTGTCTCCAATCACGGAGCTCGACAGTTA
GATTATAGTCCTGCCACTATTTCTGCTCTGGAAGAGGTGGTTCATGCCGT
TAAAGGAAGAGTTCCAATTCTTATGGATGGAGGAGTGCGGCGAGGAACAG
ATGTTTTCAAGGCATTGGCCCTCGGTGCACAAGCTG
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