CB417396

Overview
NameCB417396
Unique NameCB417396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP1B1_YEAST (AP-1 complex subunit beta-1 OS=Saccharomyces cerevisiae GN=APL2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.523e-19
Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQ--ENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTA ICVAKL+ +N +L  + G +E L + + D+NP+          EI   +  +  +  +    +S+ L ALNECTEW ++ IL  LS Y A D+ EA++I++RVT  LQH N AV
Sbjct:  151 RKTAVICVAKLFQLNKDLCVELGVVEDLVNALDDSNPLVIANATAALIEIHNMDMDAVDLSSLIQSHVSQFLLALNECTEWARIIILGTLSEYSAKDSLEAQDIIDRVTAHLQHVNPAV 269          
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP2B_SCHPO (AP-2 complex subunit beta OS=Schizosaccharomyces pombe GN=apl1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.991e-16
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTAAI +AKLY  + ++VE  G ++ LK+++SD + +           I  +S+      +    +KL+ +L +C+EW QV ILDAL  Y      EAE+  ER++P LQH N AV
Sbjct:  139 RKTAAIGIAKLYSYDKKMVESSGLIDHLKEMLSDESSVVVANSLAALMNIVNSSTGFKLTFSREISNKLVKSLTDCSEWLQVAILDALIFYVPQKPGEAESFAERISPWLQHGNAAV 255          
The following BLAST results are available for this feature:
BLAST of CB417396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AP1B1_YEAST1.523e-1941.18AP-1 complex subunit beta-1 OS=Saccharomyces cerev... [more]
AP2B_SCHPO5.991e-1638.46AP-2 complex subunit beta OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionEST0487 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P196 similar to beta-adaptin (acc# NP_192877), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417396 ID=CB417396; Name=CB417396; organism=Citrus sinensis; type=EST; length=353bp
ACGCAAGACAGCAGCCATATGTGTTGCCAAACTCTATGACATAAATGCTG
AGTTAGTTGAGGATAGGGGCTTTCTAGAATCTCTCAAGGATTTGATATCT
GACAACAATCCAATGGTTGTAGCCAATGCTGTGGCAGCACTTGCAGAGAT
TCAAGAGAATAGTAGTAGACCTATTTTTGAAATCACTAGCCACACACTCT
CGAAGCTCCTTACTGCTCTAAATGAATGCACTGAGTGGGGTCAAGTTTTT
ATATTGGATGCTCTCTCCAGATATAAAGCAGCTGATGCTCGTGAAGCTGA
AAATATAGTGGAGAGGGTTACTCCACGACTACAACATGCTAATTGTGCTG
TTG
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