CB417403

Overview
NameCB417403
Unique NameCB417403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417403 vs. ExPASy Swiss-Prot
Match: DNAJ_THESQ (Chaperone protein dnaJ OS=Thermotoga sp. (strain RQ2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  153 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 353
            KDYY+IL V  DAT+EEI+  Y RL  +WHPD+  ++R  A  RF+EI EAY+VLSDP KR  YD  G
Sbjct:    6 KDYYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENRKEAEQRFKEIQEAYEVLSDPQKRAMYDRFG 73          
BLAST of CB417403 vs. ExPASy Swiss-Prot
Match: DNAJ_THEP1 (Chaperone protein dnaJ OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  153 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 353
            KDYY+IL V  DAT+EEI+  Y RL  +WHPD+  ++R  A  RF+EI EAY+VLSDP KR  YD  G
Sbjct:    6 KDYYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENRKEAEQRFKEIQEAYEVLSDPQKRAMYDRFG 73          
BLAST of CB417403 vs. ExPASy Swiss-Prot
Match: DNAJ_THEMA (Chaperone protein dnaJ OS=Thermotoga maritima GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  153 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 353
            KDYY+IL V  DAT+EEI+  Y RL  +WHPD+  ++R  A  RF+EI EAY+VLSDP KR  YD  G
Sbjct:    6 KDYYEILGVPRDATQEEIKRAYKRLVKEWHPDRHPENRKEAEQRFKEIQEAYEVLSDPQKRAMYDRFG 73          
BLAST of CB417403 vs. ExPASy Swiss-Prot
Match: DNAJ_METTE (Chaperone protein dnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  141 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 353
            +A  +DYY+IL +  DAT E+I+ +Y +LALK+HPD+ K+   A  +F+EI+EAY VLSDP KR +YD  G
Sbjct:    1 MATTRDYYEILGLSRDATPEDIKKSYRKLALKYHPDRNKEPG-AEEKFKEISEAYAVLSDPEKRAQYDRFG 70          
BLAST of CB417403 vs. ExPASy Swiss-Prot
Match: DNAJ1_THET8 (Chaperone protein dnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  153 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYD 344
            KDYY IL V  +A++EEI+  Y RLALK+HPD+      A  RF+EINEAY VLSDP KR  YD
Sbjct:    2 KDYYAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAYAVLSDPKKRAAYD 65          
BLAST of CB417403 vs. ExPASy Swiss-Prot
Match: DNJA1_DICDI (DnaJ homolog subfamily A member 1 homolog OS=Dictyostelium discoideum GN=dnaja1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 3
Query:  141 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD--RDCATSRFQEINEAYQVLSDPVKRREYDSKG 353
            + K K+YY+ L V  D TE+E++  Y ++A+K+HPDK +   +D A ++F++I+EAY+VLSDP KR+ YDS G
Sbjct:    1 MVKEKEYYERLGVKPDCTEDELKKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEKRKMYDSYG 73          
BLAST of CB417403 vs. ExPASy Swiss-Prot
Match: DNAJ_THENN (Chaperone protein dnaJ OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  153 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 353
            KDYY+IL V  +AT+EEIR  Y RL  +WHPD+  ++R  A  RF+EI EAY+VLSDP KR  YD  G
Sbjct:    6 KDYYEILGVPRNATQEEIRKAYKRLVKEWHPDRHPENRKEAEQRFKEIQEAYEVLSDPQKRAMYDRFG 73          
BLAST of CB417403 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTE (Chaperone protein dnaJ OS=Clostridium tetani GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 3
Query:  153 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 353
            KD+Y++L V+  A + EI+  + +LALK+HPDK      A  RF+EINEAYQVLSDP KR +YD  G
Sbjct:    4 KDFYEVLGVEKGANDAEIKKAFRKLALKYHPDKNAGNKEAEERFKEINEAYQVLSDPQKRAQYDQFG 70          
BLAST of CB417403 vs. ExPASy Swiss-Prot
Match: DNAJH_SYNY3 (DnAJ-like protein slr0093 OS=Synechocystis sp. (strain PCC 6803) GN=slr0093 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 3
Query:  153 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 353
            KDYY+IL V   A+E EI+  + +LALK+HPDK      A  +F+EI+EAY+VLSDP KR++YD  G
Sbjct:    7 KDYYQILGVTKTASEAEIKKQFRKLALKYHPDKNPGDKAAEEKFKEISEAYEVLSDPEKRQKYDQFG 73          
BLAST of CB417403 vs. ExPASy Swiss-Prot
Match: DNAJ2_THET8 (Chaperone protein dnaJ 2 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ2 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.463e-13
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  141 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQVLSDPVKRREYDSKG 353
            +A  KDYY IL V  +AT+EEI+  Y RLA ++HPD  K  + A  +F+EINEAY VLSDP KRR YD+ G
Sbjct:    1 MAAKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNKSPE-AEEKFKEINEAYAVLSDPEKRRIYDTYG 70          
The following BLAST results are available for this feature:
BLAST of CB417403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
DNAJ_THESQ1.120e-1357.35Chaperone protein dnaJ OS=Thermotoga sp. (strain R... [more]
DNAJ_THEP11.120e-1357.35Chaperone protein dnaJ OS=Thermotoga petrophila (s... [more]
DNAJ_THEMA1.120e-1357.35Chaperone protein dnaJ OS=Thermotoga maritima GN=d... [more]
DNAJ_METTE1.120e-1352.11Chaperone protein dnaJ OS=Methanosarcina thermophi... [more]
DNAJ1_THET81.120e-1359.38Chaperone protein dnaJ 1 OS=Thermus thermophilus (... [more]
DNJA1_DICDI1.463e-1347.95DnaJ homolog subfamily A member 1 homolog OS=Dicty... [more]
DNAJ_THENN1.463e-1357.35Chaperone protein dnaJ OS=Thermotoga neapolitana (... [more]
DNAJ_CLOTE1.463e-1353.73Chaperone protein dnaJ OS=Clostridium tetani GN=dn... [more]
DNAJH_SYNY31.463e-1353.73DnAJ-like protein slr0093 OS=Synechocystis sp. (st... [more]
DNAJ2_THET81.463e-1356.34Chaperone protein dnaJ 2 OS=Thermus thermophilus (... [more]

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Properties
Property NameValue
Genbank descriptionEST0498 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P249 similar to unknown Arabidopsis protein (acc# NP_565770), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417403 ID=CB417403; Name=CB417403; organism=Citrus sinensis; type=EST; length=552bp
GTTTTGAGCTCTATTGTCTGTCTCGTGTTTGTGTCCCCTCTACTAAAGAG
GTCATGATGTGGGACGAATGGGTCGATTGCAACAATAACGATGAACAAAC
CCAACAGGATTCCCATGTCAATTTTGATTTTCTTTCTCTTCTCGCCAAAC
CCAAGGATTATTATAAAATATTGGAAGTTGATTACGATGCCACGGAGGAA
GAAATTAGGTCCAATTACATTCGTCTAGCGCTGAAATGGCACCCAGATAA
GCAAAAGGATCGAGATTGTGCAACTTCGAGATTTCAAGAGATAAACGAGG
CTTACCAGGTTTTGAGCGATCCTGTCAAAAGGAGAGAATATGACAGCAAA
GGGATGTTGCACATATATGATCGCAACATAATTGAGTATCTTAATCGCTA
CAAGGGCTTAATATTAACTTGCAATGGTCTTGGGATGAGGCATTCAATTG
TGTAATATGTTGTCAGCACAGTTGGGGCAGTTCATATTGGGAGGCATAGA
ATTACCAATGCTGCAAATAGCATTGAGGGCATGGAGAATAGCAGTTAATA
TG
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