CB417425

Overview
NameCB417425
Unique NameCB417425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.869e-34
Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 3
Query:  114 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            +IGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKN+VA+NP+NTVFDAKRLIGRRF +P V++
Sbjct:    8 SIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPSNTVFDAKRLIGRRFDEPVVQA 87          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP71_DROME (Major heat shock 70 kDa protein Ab OS=Drosophila melanogaster GN=Hsp70Ab PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 5.869e-34
Identity = 67/79 (84.81%), Postives = 74/79 (93.67%), Query Frame = 3
Query:  111 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSV 347
            PAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTD+ERLIGD AKN+VAMNP NTVFDAKRLIGR++ DP +
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKI 80          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP70_DROME (Major heat shock 70 kDa protein Aa OS=Drosophila melanogaster GN=Hsp70Aa PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 5.869e-34
Identity = 67/79 (84.81%), Postives = 74/79 (93.67%), Query Frame = 3
Query:  111 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSV 347
            PAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTD+ERLIGD AKN+VAMNP NTVFDAKRLIGR++ DP +
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKI 80          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP7C_DANRE (Heat shock cognate 71 kDa protein OS=Danio rerio GN=hspa8 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.665e-34
Identity = 69/83 (83.13%), Postives = 76/83 (91.57%), Query Frame = 3
Query:  105 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            +GPA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKN+VAMNPTNTV DA RL GR+F D  V+S
Sbjct:    3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVLDANRLNGRQFDDGVVQS 85          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP70_LEIMA (Heat shock 70 kDa protein (Fragment) OS=Leishmania major GN=HSP70 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.665e-34
Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 3
Query:  114 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            AIGIDLGTTYSCVGVWQ++R++IIANDQGNRTTPSYVAFTD+ERLIGDAAKN+VAMNP NTVFDAKRLIGR+F+D  V+S
Sbjct:    6 AIGIDLGTTYSCVGVWQNERLDIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPHNTVFDAKRLIGRKFNDSVVQS 85          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP71_DROSI (Major heat shock 70 kDa protein Ab OS=Drosophila simulans GN=Hsp70Ab PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.001e-33
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 3
Query:  111 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSV 347
            PAIGIDLGTTYSCVGV+QH  VEIIANDQGNRTTPSYVAFTD+ERLIGD AKN+VAMNP NTVFDAKRLIGR++ DP +
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGEVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKI 80          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP70_TRIRU (Heat shock 70 kDa protein OS=Trichophyton rubrum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.307e-33
Identity = 66/81 (81.48%), Postives = 77/81 (95.06%), Query Frame = 3
Query:  111 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            PA+GIDLGTTYSCVG+++ DR+EIIANDQGNRTTPS+VAFTDTERLIGDAAKN+VAMNP NTVFDAKRLIGR+F+D  V++
Sbjct:    3 PAVGIDLGTTYSCVGIFRDDRIEIIANDQGNRTTPSFVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRKFNDAEVQA 83          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.307e-33
Identity = 69/80 (86.25%), Postives = 75/80 (93.75%), Query Frame = 3
Query:  114 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKN+VA+NP NTVFDAKRLIGR+F D  V+S
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDAVVQS 85          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.307e-33
Identity = 69/80 (86.25%), Postives = 75/80 (93.75%), Query Frame = 3
Query:  114 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            AIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKN+VA+NP NTVFDAKRLIGR+F D  V+S
Sbjct:    6 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDAVVQS 85          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP70_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=hsp70 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.708e-33
Identity = 67/81 (82.72%), Postives = 76/81 (93.83%), Query Frame = 3
Query:  111 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            PA+GIDLGTTYSCVGV++ DR++IIANDQGNRTTPS+VAFTDTERLIGDAAKN+VAMNP NTVFDAKRLIGRRF D  V++
Sbjct:    3 PAVGIDLGTTYSCVGVFRDDRIDIIANDQGNRTTPSFVAFTDTERLIGDAAKNQVAMNPHNTVFDAKRLIGRRFGDAEVQA 83          
The following BLAST results are available for this feature:
BLAST of CB417425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP71_ORYLA5.869e-3485.00Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]
HSP71_DROME5.869e-3484.81Major heat shock 70 kDa protein Ab OS=Drosophila m... [more]
HSP70_DROME5.869e-3484.81Major heat shock 70 kDa protein Aa OS=Drosophila m... [more]
HSP7C_DANRE7.665e-3483.13Heat shock cognate 71 kDa protein OS=Danio rerio G... [more]
HSP70_LEIMA7.665e-3485.00Heat shock 70 kDa protein (Fragment) OS=Leishmania... [more]
HSP71_DROSI1.001e-3384.81Major heat shock 70 kDa protein Ab OS=Drosophila s... [more]
HSP70_TRIRU1.307e-3381.48Heat shock 70 kDa protein OS=Trichophyton rubrum G... [more]
HS71B_MOUSE1.307e-3386.25Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_MOUSE1.307e-3386.25Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP70_EMENI1.708e-3382.72Heat shock 70 kDa protein OS=Emericella nidulans G... [more]

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Properties
Property NameValue
Genbank descriptionEST0527 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P337 similar to dnaK-type molecular chaperone hsc70-3 (acc# JC4786), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417425 ID=CB417425; Name=CB417425; organism=Citrus sinensis; type=EST; length=558bp
AACAATCAATAAGTAAACACTAAAGCTCGCAAATCATCCGTGCTTTTTTT
CTTTTTTTATTGTTGATAGATTCTTGATTTTGTTAATCGATGGCTGGAAA
AGGCGAAGGTCCTGCTATTGGAATTGACTTGGGCACGACTTACTCCTGTG
TCGGTGTGTGGCAACATGATCGAGTTGAGATCATCGCTAATGATCAAGGT
AACCGAACGACGCCGTCTTATGTGGCGTTTACTGACACTGAGCGTTTGAT
CGGTGACGCTGCCAAGAACCGGGTCGCCATGAACCCCACCAACACTGTTT
TTGATGCTAAGCGTTTGATTGGGAGGCGATTCAGTGATCCTTCAGTACGG
TCAACAAGTAATAACCCAGCCGTTCGTTTTCGTCGACCTACATCATAAAG
GCTTGACATGTCTGTCATAAGCTTCCCAACATTTTTTGATAGATCTCCAA
GGGAAAATATTTCCATTTTCAAGTCCATCTTTGATGCCAAATGGTAAATA
AGATGTGCTGTAAGAATTGCCCCAGGAGGGACATCATCACCATCAGAAAA
TGATCCAG
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