CB417448

Overview
NameCB417448
Unique NameCB417448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_BRASB (Flavoprotein wrbA OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=wrbA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 46/142 (32.39%), Postives = 62/142 (43.66%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREAL--DHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFV 682
            K+ +++YS YGH+E +A  +            +  RVPE +  +     H K+   D   P     +L   D  + G  TR+G MA+QM  F D  G LW  G L GK  G F S            +T IT L H GM  V
Sbjct:    3 KVLVLYYSAYGHIEAMANAVAEGAREAGATVDVK-RVPELVPDDVAKASHYKL---DQAAPIAKIEELANYDAIIVGTGTRFGRMASQMANFLDQAGGLWARGALNGKVGGAFTSTATQHGGQETTLFTIITNLLHFGMTIV 140          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_BRAJA (Flavoprotein wrbA OS=Bradyrhizobium japonicum GN=wrbA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 46/142 (32.39%), Postives = 63/142 (44.37%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREAL--DHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFV 682
            K+ +++YS YGH+E +A  +            +  RVPE +  E     + KV   D   P     DL   D  + G  TR+G M +QM  F D  G LW +G L GK  G F S            ++ IT L H GM+ V
Sbjct:    3 KVLVLYYSAYGHIEAMANAVAEGAREAGVTVDIK-RVPELVPAEVAKASYYKV---DQAAPIAKIEDLTNYDAIIVGTGTRFGRMGSQMANFLDQAGGLWAKGALHGKVGGAFTSSATQHGGQETTLFSIITNLLHFGMVVV 140          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: RFS1_YEAST (Protein RFS1 OS=Saccharomyces cerevisiae GN=RFS1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 51/153 (33.33%), Postives = 76/153 (49.67%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVP------ETLTREALDHMKVPPRDDDIPE--ISAADLVEADGFLFGFPTRYGCMAAQMKAFFDS-TGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXA-WTAITQLAHHGMLFVPIG 691
            K+ I+ YS+   +  LA+            E  +++VP      E  T E  +  KV   + D     ++   LVE D +LFG PT++G   A+ K+F+DS TG LW +G L GK AG FVS               A++ L HHG+++VP+G
Sbjct:    3 KVAILIYSVDDIIATLAEN-EKKGIEIAGGEAEIFQVPDVSYKTEYATEEGKEAAKVAKTNADFSYKILTRETLVEYDYYLFGIPTKFGNFPAEWKSFWDSNTGGLWAKGSLHGKIAGLFVSGAISGKGDTEMCIMNAMSTLVHHGVIYVPLG 154          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_RHOPB (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain BisB18) GN=wrbA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 45/142 (31.69%), Postives = 64/142 (45.07%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREAL--DHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFV 682
            K+ +++YS YGH+E +A  +            +  RVPE +  E     H K+   D   P  +  DL   D  + G  TR+G + +QM  F D  G LW +G L GK  G F S            ++ IT L H GM+ V
Sbjct:    3 KVLVLYYSAYGHIETMANAVAEGAREAGATVDIK-RVPELVPPEIAKASHYKL---DQAAPIATVDDLANYDAIIIGTGTRFGRITSQMANFLDQAGGLWAKGVLHGKVGGAFTSTASQHGGQETTLFSIITNLLHFGMVVV 140          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_RHOP2 (Flavoprotein wrbA OS=Rhodopseudomonas palustris (strain HaA2) GN=wrbA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREAL--DHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFV 682
            K+ +++YS YGH+E +A  +            +  RVPE +  +     + K+   D   P  +  DL   D  + G  TR+G MA+QM  F D  G LW +G L GK  G F S            ++ IT L H GM+ V
Sbjct:    3 KVLVLYYSAYGHIETMANAVAEGAREAGATVDIK-RVPELVPPDVAKASYYKL---DQAAPVATIDDLANYDAIIVGTGTRFGRMASQMANFLDQAGGLWAKGALNGKVGGAFTSTATQHGGQETTLFSIITNLLHFGMVVV 140          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_RHIL3 (Flavoprotein wrbA OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=wrbA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 44/140 (31.43%), Postives = 65/140 (46.43%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREAL--DHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGML 676
            K+ +++YS YGH+E +A  +          E  + RVPE +  +     + KV   D   P  +  +L + D  + G  TR+G +A+QM+ F+D TG LW  GKLVGK    F S               I    H GM+
Sbjct:    3 KVLVLYYSAYGHIETMAYAVAEGAKSAGA-EVTVKRVPELVPEDVAKASYYKV---DQAAPIATVDELADYDAIIVGAGTRFGTVASQMRNFWDQTGGLWFAGKLVGKLGSVFTSSATQHGGQESTILGFIPTFLHQGMV 138          
The following BLAST results are available for this feature:
BLAST of CB417448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_BRASB5.703e-1232.39Flavoprotein wrbA OS=Bradyrhizobium sp. (strain BT... [more]
WRBA_BRAJA5.703e-1232.39Flavoprotein wrbA OS=Bradyrhizobium japonicum GN=w... [more]
RFS1_YEAST9.728e-1233.33Protein RFS1 OS=Saccharomyces cerevisiae GN=RFS1 P... [more]
WRBA_RHOPB1.659e-1131.69Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_RHOP21.659e-1131.69Flavoprotein wrbA OS=Rhodopseudomonas palustris (s... [more]
WRBA_RHIL36.305e-1131.43Flavoprotein wrbA OS=Rhizobium leguminosarum bv. v... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0557 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P397 similar to 1,4-benzoquinone reductase (acc# NP_195393), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417448 ID=CB417448; Name=CB417448; organism=Citrus sinensis; type=EST; length=691bp
CCCACCGAATCAAGTAACAATTCTATTCCACGGTCGGGTTGGGTTATCAC
ATTATCCTCATTGAAGAATATCCTAATTCTCGATGGGGAAAGGCGGTGGC
TGTGTCCCAAGCAAGAAAAAAAATCCACGCCCTCCCGCCATCATCGCTGA
CTCTGAACATGACCCGCTTACCCCTCCGGCCCCGATCCCAATCTCTGACC
AAATCACTCATCCTAACGACACCACAACGACCTCCTCTCAGCTGCGAGAA
ATCACAAAATTGAAGATATTCATCGTGTTCTATTCCATGTATGGCCACGT
GGAGGGGTTGGCAAAGAGGATGAAGAAGGGCGTTGATGGCGTTGACGGTG
TGGAGGGCCTGCTGTATCGGGTGCCCGAGACGTTGACGAGGGAGGCCTTG
GACCACATGAAAGTGCCGCCGAGAGATGATGACATCCCGGAGATTTCGGC
GGCGGATTTAGTGGAGGCTGACGGGTTCTTGTTTGGGTTTCCGACGAGGT
ATGGGTGCATGGCGGCCCAAATGAAGGCTTTTTTCGACTCGACTGGCATG
TTGTGGAAAGAGGGTAAACTTGTCGGTAAACCCGCCGGTTTTTTTGTCAG
CACTGGCACTCAAGGTGGCGGTCAGGAAACCACTGCTTGGACTGCAATTA
CCCAGTTGGCCCACCATGGAATGCTATTTGTTCCTATTGGG
back to top