CB417448

Overview
NameCB417448
Unique NameCB417448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_SHIDS (Flavoprotein wrbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOUT (Flavoprotein wrbA OS=Escherichia coli (strain UTI89 / UPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOSM (Flavoprotein wrbA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOSE (Flavoprotein wrbA OS=Escherichia coli (strain SE11) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOLU (Flavoprotein wrbA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOLI (Flavoprotein wrbA OS=Escherichia coli (strain K12) GN=wrbA PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOLC (Flavoprotein wrbA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOL6 (Flavoprotein wrbA OS=Escherichia coli O6 GN=wrbA PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOL5 (Flavoprotein wrbA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOK1 (Flavoprotein wrbA OS=Escherichia coli O1:K1 / APEC GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
The following BLAST results are available for this feature:
BLAST of CB417448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_SHIDS1.268e-1937.06Flavoprotein wrbA OS=Shigella dysenteriae serotype... [more]
WRBA_ECOUT1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli (strain UTI8... [more]
WRBA_ECOSM1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli (strain SMS-... [more]
WRBA_ECOSE1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli (strain SE11... [more]
WRBA_ECOLU1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O17:K52:H18 ... [more]
WRBA_ECOLI1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli (strain K12)... [more]
WRBA_ECOLC1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli (strain ATCC... [more]
WRBA_ECOL61.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O6 GN=wrbA P... [more]
WRBA_ECOL51.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O6:K15:H31 (... [more]
WRBA_ECOK11.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O1:K1 / APEC... [more]

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Properties
Property NameValue
Genbank descriptionEST0557 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P397 similar to 1,4-benzoquinone reductase (acc# NP_195393), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417448 ID=CB417448; Name=CB417448; organism=Citrus sinensis; type=EST; length=691bp
CCCACCGAATCAAGTAACAATTCTATTCCACGGTCGGGTTGGGTTATCAC
ATTATCCTCATTGAAGAATATCCTAATTCTCGATGGGGAAAGGCGGTGGC
TGTGTCCCAAGCAAGAAAAAAAATCCACGCCCTCCCGCCATCATCGCTGA
CTCTGAACATGACCCGCTTACCCCTCCGGCCCCGATCCCAATCTCTGACC
AAATCACTCATCCTAACGACACCACAACGACCTCCTCTCAGCTGCGAGAA
ATCACAAAATTGAAGATATTCATCGTGTTCTATTCCATGTATGGCCACGT
GGAGGGGTTGGCAAAGAGGATGAAGAAGGGCGTTGATGGCGTTGACGGTG
TGGAGGGCCTGCTGTATCGGGTGCCCGAGACGTTGACGAGGGAGGCCTTG
GACCACATGAAAGTGCCGCCGAGAGATGATGACATCCCGGAGATTTCGGC
GGCGGATTTAGTGGAGGCTGACGGGTTCTTGTTTGGGTTTCCGACGAGGT
ATGGGTGCATGGCGGCCCAAATGAAGGCTTTTTTCGACTCGACTGGCATG
TTGTGGAAAGAGGGTAAACTTGTCGGTAAACCCGCCGGTTTTTTTGTCAG
CACTGGCACTCAAGGTGGCGGTCAGGAAACCACTGCTTGGACTGCAATTA
CCCAGTTGGCCCACCATGGAATGCTATTTGTTCCTATTGGG
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