CB417448

Overview
NameCB417448
Unique NameCB417448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOHS (Flavoprotein wrbA OS=Escherichia coli O9:H4 (strain HS) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECODH (Flavoprotein wrbA OS=Escherichia coli (strain K12 / DH10B) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECOBW (Flavoprotein wrbA OS=Escherichia coli (strain K12 / BW2952) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECO8A (Flavoprotein wrbA OS=Escherichia coli O8 (strain IAI1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECO7I (Flavoprotein wrbA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECO5E (Flavoprotein wrbA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET++ +  +  K   +    P  +  +L   D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMSPQLFE--KAGGKTQTAPVATPQELANYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECO57 (Putative flavoprotein wrbA OS=Escherichia coli O157:H7 GN=wrbA PE=5 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET++ +  +  K   +    P  +  +L   D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMSPQLFE--KAGGKTQTAPVATPQELANYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECO55 (Flavoprotein wrbA OS=Escherichia coli (strain 55989 / EAEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECO45 (Flavoprotein wrbA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
[Close]
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECO27 (Flavoprotein wrbA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2 
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142
The following BLAST results are available for this feature:
BLAST of CB417448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_ECOHS1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O9:H4 (strai... [more]
WRBA_ECODH1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli (strain K12 ... [more]
WRBA_ECOBW1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli (strain K12 ... [more]
WRBA_ECO8A1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O8 (strain I... [more]
WRBA_ECO7I1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O7:K1 (strai... [more]
WRBA_ECO5E1.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O157:H7 (str... [more]
WRBA_ECO571.268e-1937.06Putative flavoprotein wrbA OS=Escherichia coli O15... [more]
WRBA_ECO551.268e-1937.06Flavoprotein wrbA OS=Escherichia coli (strain 5598... [more]
WRBA_ECO451.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O45:K1 (stra... [more]
WRBA_ECO271.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O127:H6 (str... [more]

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Properties
Property NameValue
Genbank descriptionEST0557 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P397 similar to 1,4-benzoquinone reductase (acc# NP_195393), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417448 ID=CB417448; Name=CB417448; organism=Citrus sinensis; type=EST; length=691bp
CCCACCGAATCAAGTAACAATTCTATTCCACGGTCGGGTTGGGTTATCAC
ATTATCCTCATTGAAGAATATCCTAATTCTCGATGGGGAAAGGCGGTGGC
TGTGTCCCAAGCAAGAAAAAAAATCCACGCCCTCCCGCCATCATCGCTGA
CTCTGAACATGACCCGCTTACCCCTCCGGCCCCGATCCCAATCTCTGACC
AAATCACTCATCCTAACGACACCACAACGACCTCCTCTCAGCTGCGAGAA
ATCACAAAATTGAAGATATTCATCGTGTTCTATTCCATGTATGGCCACGT
GGAGGGGTTGGCAAAGAGGATGAAGAAGGGCGTTGATGGCGTTGACGGTG
TGGAGGGCCTGCTGTATCGGGTGCCCGAGACGTTGACGAGGGAGGCCTTG
GACCACATGAAAGTGCCGCCGAGAGATGATGACATCCCGGAGATTTCGGC
GGCGGATTTAGTGGAGGCTGACGGGTTCTTGTTTGGGTTTCCGACGAGGT
ATGGGTGCATGGCGGCCCAAATGAAGGCTTTTTTCGACTCGACTGGCATG
TTGTGGAAAGAGGGTAAACTTGTCGGTAAACCCGCCGGTTTTTTTGTCAG
CACTGGCACTCAAGGTGGCGGTCAGGAAACCACTGCTTGGACTGCAATTA
CCCAGTTGGCCCACCATGGAATGCTATTTGTTCCTATTGGG
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