CB417448

Overview
NameCB417448
Unique NameCB417448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_ECO24 (Flavoprotein wrbA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.268e-19
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            K+ +++YSMYGH+E +A+ +          E ++ RVPET+  +  +  K   +    P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_SALTY (Flavoprotein wrbA OS=Salmonella typhimurium GN=wrbA PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 54/143 (37.76%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            KI +++YSMYGH+E +A  +          E ++ RVPET+  E     K   +  + P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK    F S             T  T LAHHGM+ VPIG
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIF--AKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGSLYGKLGSVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_SALPC (Flavoprotein wrbA OS=Salmonella paratyphi C (strain RKS4594) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 54/143 (37.76%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            KI +++YSMYGH+E +A  +          E ++ RVPET+  E     K   +  + P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK    F S             T  T LAHHGM+ VPIG
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIF--AKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGSLYGKLGSVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_GEOMG (Flavoprotein wrbA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 57/144 (39.58%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  260 LKIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHM-KVPPRDD--DIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFV 682
            +K+ I FYSMYGH+  +A+ +          E +L RVPETL  + L  M  V P+     IP  +  +L  AD  +FG PTR+G M  QM+ F D+TG LW +G LVGK  G F S             T  T L H GM+ V
Sbjct:    1 MKVLIPFYSMYGHIYRMAEAVAEGVREVSGAEAVLRRVPETLPTDVLQKMGAVEPQKAFAHIPVCTVDELAAADAIIFGTPTRFGNMCGQMRQFLDATGGLWVKGGLVGKAGGVFTSSATQHGGQESTILTFHTFLLHQGMVLV 144          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_CITK8 (Flavoprotein wrbA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=wrbA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.656e-19
Identity = 55/143 (38.46%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            KI +++YSMYGH+E +A  +          E ++ RVPET+  E     K   +  + P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIG
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGANKVDGAEVVIKRVPETMQPEIF--AKAGGKTQNAPVATPQELPDYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_SALSV (Flavoprotein wrbA OS=Salmonella schwarzengrund (strain CVM19633) GN=wrbA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 54/143 (37.76%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            KI +++YSMYGH+E +A  +          E ++ RVPET+  E     K   +  + P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK    F S             T  T LAHHGM+ VPIG
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIF--AKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLGSVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_SALPB (Flavoprotein wrbA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=wrbA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 54/143 (37.76%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            KI +++YSMYGH+E +A  +          E ++ RVPET+  E     K   +  + P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK    F S             T  T LAHHGM+ VPIG
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIF--AKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLGSVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_SALNS (Flavoprotein wrbA OS=Salmonella newport (strain SL254) GN=wrbA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 54/143 (37.76%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            KI +++YSMYGH+E +A  +          E ++ RVPET+  E     K   +  + P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK    F S             T  T LAHHGM+ VPIG
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIF--AKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLGSVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_SALHS (Flavoprotein wrbA OS=Salmonella heidelberg (strain SL476) GN=wrbA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 54/143 (37.76%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            KI +++YSMYGH+E +A  +          E ++ RVPET+  E     K   +  + P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK    F S             T  T LAHHGM+ VPIG
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIF--AKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLGSVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_SALG2 (Flavoprotein wrbA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=wrbA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 54/143 (37.76%), Postives = 73/143 (51.05%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIG 691
            KI +++YSMYGH+E +A  +          E ++ RVPET+  E     K   +  + P  +  +L + D  +FG PTR+G M+ QM+ F D TG LW  G L GK    F S             T  T LAHHGM+ VPIG
Sbjct:    3 KILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMPPEIF--AKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLGSVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIG 142          
The following BLAST results are available for this feature:
BLAST of CB417448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_ECO241.268e-1937.06Flavoprotein wrbA OS=Escherichia coli O139:H28 (st... [more]
WRBA_SALTY1.656e-1937.76Flavoprotein wrbA OS=Salmonella typhimurium GN=wrb... [more]
WRBA_SALPC1.656e-1937.76Flavoprotein wrbA OS=Salmonella paratyphi C (strai... [more]
WRBA_GEOMG1.656e-1939.58Flavoprotein wrbA OS=Geobacter metallireducens (st... [more]
WRBA_CITK81.656e-1938.46Flavoprotein wrbA OS=Citrobacter koseri (strain AT... [more]
WRBA_SALSV2.162e-1937.76Flavoprotein wrbA OS=Salmonella schwarzengrund (st... [more]
WRBA_SALPB2.162e-1937.76Flavoprotein wrbA OS=Salmonella paratyphi B (strai... [more]
WRBA_SALNS2.162e-1937.76Flavoprotein wrbA OS=Salmonella newport (strain SL... [more]
WRBA_SALHS2.162e-1937.76Flavoprotein wrbA OS=Salmonella heidelberg (strain... [more]
WRBA_SALG22.162e-1937.76Flavoprotein wrbA OS=Salmonella gallinarum (strain... [more]

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Properties
Property NameValue
Genbank descriptionEST0557 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P397 similar to 1,4-benzoquinone reductase (acc# NP_195393), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417448 ID=CB417448; Name=CB417448; organism=Citrus sinensis; type=EST; length=691bp
CCCACCGAATCAAGTAACAATTCTATTCCACGGTCGGGTTGGGTTATCAC
ATTATCCTCATTGAAGAATATCCTAATTCTCGATGGGGAAAGGCGGTGGC
TGTGTCCCAAGCAAGAAAAAAAATCCACGCCCTCCCGCCATCATCGCTGA
CTCTGAACATGACCCGCTTACCCCTCCGGCCCCGATCCCAATCTCTGACC
AAATCACTCATCCTAACGACACCACAACGACCTCCTCTCAGCTGCGAGAA
ATCACAAAATTGAAGATATTCATCGTGTTCTATTCCATGTATGGCCACGT
GGAGGGGTTGGCAAAGAGGATGAAGAAGGGCGTTGATGGCGTTGACGGTG
TGGAGGGCCTGCTGTATCGGGTGCCCGAGACGTTGACGAGGGAGGCCTTG
GACCACATGAAAGTGCCGCCGAGAGATGATGACATCCCGGAGATTTCGGC
GGCGGATTTAGTGGAGGCTGACGGGTTCTTGTTTGGGTTTCCGACGAGGT
ATGGGTGCATGGCGGCCCAAATGAAGGCTTTTTTCGACTCGACTGGCATG
TTGTGGAAAGAGGGTAAACTTGTCGGTAAACCCGCCGGTTTTTTTGTCAG
CACTGGCACTCAAGGTGGCGGTCAGGAAACCACTGCTTGGACTGCAATTA
CCCAGTTGGCCCACCATGGAATGCTATTTGTTCCTATTGGG
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