CB417448

Overview
NameCB417448
Unique NameCB417448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_BURM1 (Flavoprotein wrbA OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=wrbA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 51/142 (35.92%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPI 688
            K+ +++YS YGHVE +A+++          E  L RVPET+  +    + +   D   P  +  +L + D  LFG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  T L HHGM+ V +
Sbjct:    3 KVLVLYYSSYGHVETMAQQVAEGAKSVPGVEVTLKRVPETIPADQAKAIGIKT-DQAAPVATVDELADYDAILFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGV 143          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_GEOLS (Flavoprotein wrbA OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=wrbA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 54/145 (37.24%), Postives = 70/145 (48.28%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDD---DIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPI 688
            KI IVFYSMYGH+  +A+ +             L +VPE ++ E L+             IP  +   L EAD  +FG PTR+G MAAQM+ F D TG LW  G LVGK    F S             +  + L HHGM+ V +
Sbjct:    3 KIQIVFYSMYGHIHTMAEAVADGVRSVGGCSAELLQVPELISEEVLEKYGAKAARAAFAHIPTATVERLAEADAIIFGTPTRFGNMAAQMRNFLDQTGKLWLSGGLVGKVGSVFASTATQHGGQETTITSFHSTLLHHGMIIVGV 147          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_THICR (Flavoprotein wrbA OS=Thiomicrospira crunogena (strain XCL-2) GN=wrbA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPI 688
            K+ +++YSMYGHVE +AK +          E  + RVPE +T E      V   D   P  + ++L + D  +FG PTR+G M AQM+ F D TG LW  GKL+ K    F S             +  T L H+GM+ V +
Sbjct:    3 KVLVLYYSMYGHVETMAKAIAEGAGSVEGVEVTIKRVPELMTDEQAKKAGVK-LDQSAPIATPSELADYDAIIFGTPTRFGNMCAQMRNFLDQTGGLWAGGKLINKVGSVFTSTGTQHGGQETTITSFHTNLFHYGMIVVGV 143          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_PARL1 (Flavoprotein wrbA OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=wrbA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 54/144 (37.50%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  257 KLKIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDH--MKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFV 682
            K K+ ++++S YGH+E LAK +          E LL RVPET+  +A+ +  MKV   + + P  +  +L + D  +FG PTR+G M  QM+ F D TG LW +G LVGK    F S             +  T L HHGM+ V
Sbjct:    4 KTKVLVLYHSSYGHIETLAKAVAEGAASQAGTEVLLKRVPETMPADAMANAGMKV---EQEAPVATPQELGDYDAVIFGTPTRFGNMTGQMRTFLDQTGGLWAKGALVGKVGSVFTSTGTGGGNETTIT-SFHTNLFHHGMVVV 143          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_AZOVD (Flavoprotein wrbA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=wrbA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 57/144 (39.58%), Postives = 71/144 (49.31%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQ----LAHHGMLFV 682
            KI +++YSMYGH+E +A+ +          E  L RVPET+  E          D   P     +L + D  LFG PTR+G MA QM+ F D TG LW  G LVGK A  F S           + T IT     LAHHGM+ V
Sbjct:    3 KILVLYYSMYGHIERMAEAVAEGARSVPGVEVTLKRVPETMPEEVARKAGAK-LDQAAPPAEPKELADYDAILFGTPTRFGNMAGQMRNFLDQTGGLWVSGALVGKFASVFTS-----TGTGGGSETTITSFWHTLAHHGMVIV 140          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_BURS3 (Flavoprotein wrbA OS=Burkholderia sp. (strain 383) GN=wrbA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPI 688
            K+ +++YS YGHVE +A+ +          E  L RVPET+  +    + V   D   P  +  +L + D  +FG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  T L HHGM+ V +
Sbjct:    3 KVLVLYYSSYGHVETMAQHIAEGAKSVAGVEVTLKRVPETIPVDQARAIGVKV-DQAAPVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGV 143          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_BURCJ (Flavoprotein wrbA OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=wrbA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPI 688
            K+ +++YS YGHVE +A+ +          E  L RVPET+  +    + V   D   P  +  +L + D  +FG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  T L HHGM+ V +
Sbjct:    3 KVLVLYYSSYGHVETMAQHIVEGAKSVPGVEVTLKRVPETIPVDQARAIGVKV-DQAAPVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGV 143          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_BURCH (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain HI2424) GN=wrbA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPI 688
            K+ +++YS YGHVE +A+ +          E  L RVPET+  +    + V   D   P  +  +L + D  +FG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  T L HHGM+ V +
Sbjct:    3 KVLVLYYSSYGHVETMAQHIVEGAKSVPGVEVTLKRVPETIPVDQARAIGVKV-DQAAPVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGV 143          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_BURCC (Flavoprotein wrbA OS=Burkholderia cenocepacia (strain MC0-3) GN=wrbA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPI 688
            K+ +++YS YGHVE +A+ +          E  L RVPET+  +    + V   D   P  +  +L + D  +FG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  T L HHGM+ V +
Sbjct:    3 KVLVLYYSSYGHVETMAQHIVEGAKSVPGVEVTLKRVPETIPVDQARAIGVKV-DQAAPVATVDELADYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGV 143          
BLAST of CB417448 vs. ExPASy Swiss-Prot
Match: WRBA_BURVG (Flavoprotein wrbA OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=wrbA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 51/142 (35.92%), Postives = 70/142 (49.30%), Query Frame = 2
Query:  263 KIFIVFYSMYGHVEGLAKRMXXXXXXXXXXEGLLYRVPETLTREALDHMKVPPRDDDIPEISAADLVEADGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPI 688
            K+ +++YS YGHVE +A+ +          E  L RVPET+  +    + V   D   P  +  +L   D  +FG PTR+G MA QM+ F D TG LW +G LVGK    F S             +  T L HHGM+ V +
Sbjct:    3 KVLVLYYSSYGHVETMAQHVAEGAKSVPGVEVTLKRVPETIPVDQAKAIGVKV-DQAAPVATVDELANYDAIIFGTPTRFGNMAGQMRTFLDQTGGLWMKGALVGKIGSVFASTGTQHGGQETTITSFHTTLLHHGMVIVGV 143          
The following BLAST results are available for this feature:
BLAST of CB417448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WRBA_BURM11.830e-1835.92Flavoprotein wrbA OS=Burkholderia multivorans (str... [more]
WRBA_GEOLS3.122e-1837.24Flavoprotein wrbA OS=Geobacter lovleyi (strain ATC... [more]
WRBA_THICR4.078e-1835.92Flavoprotein wrbA OS=Thiomicrospira crunogena (str... [more]
WRBA_PARL15.326e-1837.50Flavoprotein wrbA OS=Parvibaculum lavamentivorans ... [more]
WRBA_AZOVD6.955e-1839.58Flavoprotein wrbA OS=Azotobacter vinelandii (strai... [more]
WRBA_BURS39.084e-1835.92Flavoprotein wrbA OS=Burkholderia sp. (strain 383)... [more]
WRBA_BURCJ9.084e-1835.92Flavoprotein wrbA OS=Burkholderia cepacia (strain ... [more]
WRBA_BURCH9.084e-1835.92Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
WRBA_BURCC9.084e-1835.92Flavoprotein wrbA OS=Burkholderia cenocepacia (str... [more]
WRBA_BURVG1.186e-1735.92Flavoprotein wrbA OS=Burkholderia vietnamiensis (s... [more]

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Properties
Property NameValue
Genbank descriptionEST0557 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P397 similar to 1,4-benzoquinone reductase (acc# NP_195393), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417448 ID=CB417448; Name=CB417448; organism=Citrus sinensis; type=EST; length=691bp
CCCACCGAATCAAGTAACAATTCTATTCCACGGTCGGGTTGGGTTATCAC
ATTATCCTCATTGAAGAATATCCTAATTCTCGATGGGGAAAGGCGGTGGC
TGTGTCCCAAGCAAGAAAAAAAATCCACGCCCTCCCGCCATCATCGCTGA
CTCTGAACATGACCCGCTTACCCCTCCGGCCCCGATCCCAATCTCTGACC
AAATCACTCATCCTAACGACACCACAACGACCTCCTCTCAGCTGCGAGAA
ATCACAAAATTGAAGATATTCATCGTGTTCTATTCCATGTATGGCCACGT
GGAGGGGTTGGCAAAGAGGATGAAGAAGGGCGTTGATGGCGTTGACGGTG
TGGAGGGCCTGCTGTATCGGGTGCCCGAGACGTTGACGAGGGAGGCCTTG
GACCACATGAAAGTGCCGCCGAGAGATGATGACATCCCGGAGATTTCGGC
GGCGGATTTAGTGGAGGCTGACGGGTTCTTGTTTGGGTTTCCGACGAGGT
ATGGGTGCATGGCGGCCCAAATGAAGGCTTTTTTCGACTCGACTGGCATG
TTGTGGAAAGAGGGTAAACTTGTCGGTAAACCCGCCGGTTTTTTTGTCAG
CACTGGCACTCAAGGTGGCGGTCAGGAAACCACTGCTTGGACTGCAATTA
CCCAGTTGGCCCACCATGGAATGCTATTTGTTCCTATTGGG
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