CB610519
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 7.954e-55 Identity = 124/306 (40.52%), Postives = 173/306 (56.54%), Query Frame = 1 Query: 4 GLHGWAFTLTNFAKMYASKFGVD----ESKMMERLWGENF-------FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD--PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKK-----DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867 GL GW FTL FA+ Y KF ++ E K+ LW FD + + N + FV + PI ++ +C N + +++ L+ V K GK+L K VM+TWLPA+ +LE + LPSP +QK R + LYEGP DD ANAI+ CD E P+ +YVSKMIP++D RF AFGRVFSGK+ G+K+R+ P Y PG ++ ++ KSV RTV+ MG+ + V + P GN + ++G+D + K T+TN + AH IR+ FSVSPVV+VAV K DL Sbjct: 214 GLQGWGFTLRQFARFYLEKFNMNGFEGERKLTNFLWSHKVSCTSDDPFDASIKHIAKPNPA----RSPFVVYVLNPIYKVKELCNNGKVEEIKEYLKFYKVDFKGVVLTGSGKSLFKEVMKTWLPAADCILEQIALKLPSPLQSQKLRYDYLYEGPADDEVANAIKMCDGSDEAPVSMYVSKMIPSND-NRFIAFGRVFSGKIFPGMKIRVQEPGYSPGSEELSNTSLIHNKSVLRTVVMMGRGYKDVPNCPAGNIIGIIGIDDCLKKTGTITNREA--AHNIRSMKFSVSPVVKVAVSAKRPEDL 512
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.407e-43 Identity = 98/284 (34.51%), Postives = 163/284 (57.39%), Query Frame = 1 Query: 22 FTLTNFAKMYASKFG-VDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEK-EVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867 FTL +FAK+YA FG ++ + +RLWG+ +F+P TRK+T + S + +R FV+F EP+ +I+ + D L L +LG+ + EE +L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R I + + V VP GN V + G+DQ I K AT+T + +A R F+ + V+++AV+ S+L Sbjct: 317 FTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAPSSSS-QRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL 599
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43 Identity = 98/284 (34.51%), Postives = 163/284 (57.39%), Query Frame = 1 Query: 22 FTLTNFAKMYASKFG-VDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEK-EVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867 FTL +FAK+YA FG ++ + +RLWG+ +F+P TRK+T + S + +R FV+F EP+ +I+ + D L L +LG+ + EE +L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R I + + V VP GN V + G+DQ I K AT+T + +A R F+ + V+++AV+ S+L Sbjct: 318 FTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSS-QRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL 600
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43 Identity = 98/284 (34.51%), Postives = 163/284 (57.39%), Query Frame = 1 Query: 22 FTLTNFAKMYASKFG-VDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEK-EVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867 FTL +FAK+YA FG ++ + +RLWG+ +F+P TRK+T + S + +R FV+F EP+ +I+ + D L L +LG+ + EE +L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R I + + V VP GN V + G+DQ I K AT+T + +A R F+ + V+++AV+ S+L Sbjct: 318 FTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSS-QRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL 600
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43 Identity = 98/284 (34.51%), Postives = 163/284 (57.39%), Query Frame = 1 Query: 22 FTLTNFAKMYASKFG-VDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEK-EVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867 FTL +FAK+YA FG ++ + +RLWG+ +F+P TRK+T + S + +R FV+F EP+ +I+ + D L L +LG+ + EE +L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ +CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R I + + V VP GN V + G+DQ I K AT+T + +A R F+ + V+++AV+ S+L Sbjct: 318 FTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSS-QRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL 600
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 9.121e-43 Identity = 97/284 (34.15%), Postives = 162/284 (57.04%), Query Frame = 1 Query: 22 FTLTNFAKMYASKFG-VDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEK-EVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867 FTL +FAK+YA +G ++ + +RLWG+ +F+P TRK+T + S + +R FV+F EP+ +I+ + D L L +LG+ + EE +L + L++ V + + + ++M + H+PSP K ++E+ Y G +D A+ CDP+GPLM + +KM D +F AFGRV SG + G V+++G NY +++D + +V R I + + V VP GN V + G+DQ I K AT+T + +A R F+ + V+++AV+ S+L Sbjct: 318 FTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSS-QRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL 600
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.696e-31 Identity = 82/289 (28.37%), Postives = 148/289 (51.21%), Query Frame = 1 Query: 13 GWAFTLTNFAKMYASKFG-VDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPE--GPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEK-EVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867 G+ FTL++FAK+Y + G +D +RLWG+ +FD TRK+ ++ R FV F EP+ ++ + ++DE +KL L + +K ++ L K L++ + ++ + + H+PSP + Y GP++ + AI E PL+++V+K+ D F+AF RV+SG+V G KV+++G NY +++D+ V + + + + V+ G V + G+D I+K AT+ ++ + D + R V +VAV+ S+L Sbjct: 326 GYCFTLSSFAKLYIDRHGGIDVDLFSKRLWGDIYFDSKTRKFAKQSLDGSGV-RSFVHFILEPLYKLHTLTISDEAEKLKKHLSSFQIYLKPKDYLLDPKPLLQLICASFFGFPVGFVNAVTRHIPSPRENAARKASQSYIGPINSSIGKAILEMSREESAPLVMHVTKLYNTVDANNFYAFARVYSGQVKKGQKVKVLGENYSLEDEEDMVVAHIAEICVPCARYRLHVDGAVAGMLVLLGGVDNSISKTATIVSDNLKDDPYIFRPIAHMSESVFKVAVEPHNPSEL 613
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_THEGJ (Elongation factor 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fusA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.159e-21 Identity = 71/206 (34.47%), Postives = 112/206 (54.37%), Query Frame = 1 Query: 250 PMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867 P ++K GV+ K + EL K +K + Q P +L+M++ HLP+P AQKYR+ +L+ G ++ A+ CDP+G +++ V+K+I G A GRV+SG V TG +V Y+ K+ +Q+ I+MG ++ +E VP GN VA+ GL + T++ EK P A ++ PVV VA++ K DL Sbjct: 214 PFMKKTGVSFK-DIVELTNKGDLKGLRQK-APLHVVVLDMVVRHLPNPLEAQKYRIPHLWRGDINSDVGQAMLKCDPKGKMVMVVTKIILDKHAGE-VATGRVWSGTVKTGQEV------YLINSKRK---ARIQQVGIYMGPERINMEAVPAGNIVAVTGLRDAMA-GETVSVEK---IEPFEALHYTSEPVVTVAIEAKNVKDL 403
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.977e-21 Identity = 68/206 (33.01%), Postives = 109/206 (52.91%), Query Frame = 1 Query: 250 PMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867 P ++K GV+ K + +L +K + + P +L+M++ HLP+P AQKYR+ +L+ G ++ A+ NCDP+GP+ + V+K+I G A GRV+SG V TG +V Y+ K+ +Q+ I+MG ++ +E VP GN VA+ GL + + E P A ++ PVV VA++ K DL Sbjct: 214 PYMKKTGVSFK-DIIDLTNAGDLKTLRKK-APLHVVVLDMVVKHLPNPLEAQKYRIPHLWRGDINSDVGQAMMNCDPKGPMTMVVTKIILDKHAGE-VATGRVWSGTVKTGQEV------YLINSKRK---ARIQQVGIYMGPERINMEAVPAGNIVAVTGLRDAMAGETVSVQQIE----PFEALHYTSEPVVTVAIEAKNVKDL 403
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_THEON (Elongation factor 2 OS=Thermococcus onnurineus (strain NA1) GN=fusA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 9.813e-21 Identity = 68/206 (33.01%), Postives = 108/206 (52.43%), Query Frame = 1 Query: 250 PMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867 P +++ GVT K + EL +K + Q P +L+M++ HLP+P AQKYR+ +L+ G ++ A+ NCDP+G +++ V+K+I G A GRV+SG V TG +V Y+ K+ +Q+ I+MG ++ +E V GN VA+ GL + + E P A ++ PVV VA++ K DL Sbjct: 214 PYMKRTGVTFK-DIVELTNAGDLKTLRQK-APLHVVVLDMVVRHLPNPLEAQKYRIPHLWRGDINSDVGQAMINCDPKGKMVMVVTKIILDKHAGE-VATGRVWSGTVKTGQEV------YLINSKRK---ARIQQVGIYMGPERVNMEAVQAGNIVAVTGLRDAMAGETVSVEQIE----PFEALHYTSEPVVTVAIEAKNVKDL 403 The following BLAST results are available for this feature:
BLAST of CB610519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB610519 ID=CB610519; Name=CB610519; organism=Citrus sinensis; type=EST; length=868bpback to top |