CB610519

Overview
NameCB610519
Unique NameCB610519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_THEAC (Elongation factor 2 OS=Thermoplasma acidophilum GN=fusA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.915e-16
Identity = 57/170 (33.53%), Postives = 85/170 (50.00%), Query Frame = 1
Query:  358 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867
            +L M+I HLP P TAQ YR++ +++G LD     A+ NCD +GP+ + V+K+I     G   A GR+FSG V  G  +      Y+ G  K      VQ   + +G  +  V+++  GN  A+VGL   I      + E  V   P         PVV +A++ K  +DL
Sbjct:  248 ILNMVIRHLPDPKTAQSYRIKQIWKGDLDSEIGKAMINCDYKGPVAMMVTKIIIDPHAGE-IAIGRLFSGTVKKGTDL------YISGAGKG----KVQTLAMMVGPDRIPVDEITAGNIAAIVGLKGAIAGATVSSLENMV---PFEPMIHYSEPVVTLAIEAKHTADL 403          
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.915e-16
Identity = 61/210 (29.05%), Postives = 101/210 (48.10%), Query Frame = 1
Query:  250 PMLQKLGVTMKSE----EKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867
            P +Q+ G++ K      E+E  G+   +       P    +L+M I HLP+P  AQKYR+ N+++G  +     ++  CDP GPL   V+K+I     G   A  R+FSG++  G  +      Y+ G K+       Q+  I+MG ++  V  +  GN  A+ GL +  T   T+ +  E+      +   +  PV+ VA++ K   DL
Sbjct:  214 PYMQRSGISFKDIIDYCEQEKQGELADRA------PLHEVILDMAITHLPNPLQAQKYRIPNIWKGDSESTIGKSMVACDPNGPLAGVVTKIIVDKHAGAISAC-RLFSGRIKQGDDL------YLVGSKQK---ARAQQVSIFMGAERVQVPSISAGNICALTGLRE-ATAGETVCSPSEILEPGFESLTHTSEPVITVAIEAKNTKDL 406          
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_PICTO (Elongation factor 2 OS=Picrophilus torridus GN=fusA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.572e-16
Identity = 61/193 (31.61%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  289 EKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867
            +KEL  KA          P    +L+M+I +LP+P  AQKYR+  +++G LD     A+ +CD  GP+ + V+K+I     G   A GR+FSG +  G ++      YV G  K      VQ   + +G  +  ++++  GN VA++GL   I   A  T     D  P         PVV +A++ K  +DL
Sbjct:  235 QKELAKKA----------PLHKVVLDMVIKNLPNPREAQKYRIPQIWKGDLDSEIGKAMLSCDDNGPVSMMVTKIIIDPHAGE-IAVGRLFSGIIRKGSEL------YVSGAGK----TKVQVLSMMVGPDRIPIDEIAAGNIVAIIGLKGAI---AGSTVSSLSDMEPFEPMTHYTDPVVTLAIEAKHTADL 403          
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_METS3 (Elongation factor 2 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=fusA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.278e-16
Identity = 61/214 (28.50%), Postives = 96/214 (44.86%), Query Frame = 1
Query:  250 PMLQKLGVTMKS--------EEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867
            PM+Q+ GV  K         ++KEL  K          +P S  LL M++ HLPSP  +Q+YRV N++EG ++      +    P+GPL + V+ +      G   A GRV+ G +  G +V ++G +             VQ+  ++ G ++   + VP GN V + G    I      + E ++             PVV VAV+ K   DL
Sbjct:  214 PMMQETGVNFKDIIDYCNDDKQKELAQK----------VPLSEVLLGMVVEHLPSPKVSQEYRVPNIWEGDIESPAGQGMITTSPDGPLAVMVTNVSVDKHAGE-IATGRVYGGSIEKGTEVYLVGSH---------SKSRVQQVGVYFGPERVNTDAVPAGNIVYVAGAKGAIAGETICSPEDKI--KEFEGLDHISEPVVTVAVEAKNTKDL 405          
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16
Identity = 51/178 (28.65%), Postives = 87/178 (48.88%), Query Frame = 1
Query:    7 LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK-WTSRNTGSPTCKRGFVQFCYEPIKQII-NICMNDEKDKLWPMLQKLGVTMKSEE-KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLY-----EGPLDDAYANAIRNCDPEGPLMLYVSKMI 516
            + GW F +   AK Y  K G     + + LWG+ + DP T+K   ++     + K  F     E I +I  NI  + + + +  + + L + + + + +    K L++ +M  WLP S+A+L  +I  LPSP  +Q  R+  +         +D     A++ CD EGP+  YVSKM+
Sbjct:  237 IDGWGFNIGQLAKFYEQKLGAKRENLQKVLWGDFYMDPKTKKIINNKGLKGRSLKPLFTSLILENIWKIYQNIITSRDSEMVEKIAKTLNIKLLARDLRSKDDKQLLRTIMGQWLPVSTAVLLTVIEKLPSPLESQTDRLNTILVSESDTAAMDPRLLKAMKTCDKEGPVSAYVSKML 414          
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16
Identity = 55/170 (32.35%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  358 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867
            +L M+I HLP P TAQ YR++ +++G L+     ++ +CD +GP+ + V+K+I     G   A GR+FSG V  G  +      Y+ G+ K      VQ   + +G  +  VE+V  GN  A+VGL   I  +   + E   +  P         PVV +A++ K  +DL
Sbjct:  248 ILNMVIRHLPDPKTAQSYRIKQIWKGDLETEVGKSMVSCDFKGPVAMMVTKIIIDPHAGE-IAIGRLFSGTVKKGTDL------YISGDGKG----KVQTLAMMVGPDRIPVEEVTAGNIAAIVGLKGAIAGSTVSSIE---NMEPFEPMIHYSEPVVTLAIEAKHTADL 403          
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.241e-15
Identity = 61/212 (28.77%), Postives = 100/212 (47.17%), Query Frame = 1
Query:  250 PMLQKLGVTMKSEEKELMGKALMKRVMQ-TW--LPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNE---KEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867
            P +QK G+  K   +     A  K + +  W   P    +L+M++ HLPSP  AQKYRV  L+ G L+  Y  A+   DP GP +  V+K+I      +  A  RV+SG +  G++V ++  N     KK      +Q+  ++ G ++  +E+   GN +A+ G+    +    +  E    + +  P  A      PVV  A++ K   DL
Sbjct:  214 PYMQKTGIGFKQIAEIYNTAADAKEIRRRVWEIAPLYRVVLDMVVRHLPSPKEAQKYRVPKLWHGDLNSKYGKAMLEADPNGPAVAVVTKVIVDKTSKQETAIARVWSGTIRRGMEVWLLNAN-----KK----VRLQQVGVFKGIQKIQIEEAKAGNIIAISGVRDLQSGETIVEPEPDGSKPNIPPFEAIKHIFDPVVTKAIEPKDPRDL 416          
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.621e-15
Identity = 62/209 (29.67%), Postives = 96/209 (45.93%), Query Frame = 1
Query:  250 PMLQKLGVTMKSEEK---ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867
            P++Q+ G+      K   E   K L ++V     P    LL M++ HLPSPA +Q YRV  ++ G L+     A+   DPEGPL + V+ +      G   A GRV+ G +  G +V ++G +             VQ+  ++MG ++   + VP GN VA+ G    +         +++ A           PVV VAV+ K   DL
Sbjct:  214 PIMQETGINFNDIYKYCTEDNQKELAQKV-----PLHQVLLGMVVEHLPSPAESQAYRVPIIWSGDLESEEGQAMLKTDPEGPLAVMVTDVSIDKHAGE-VATGRVYGGAIEKGSEVFLVGSH---------SKARVQQVGVYMGPERVNTDKVPAGNIVAITGAKNAVAGETICDTGRKIKA--FEGLEHISEPVVTVAVEAKNTKDL 405          
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_METTP (Elongation factor 2 OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=fusA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.161e-15
Identity = 60/184 (32.61%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  316 MKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAXXFSVSPVVRVAVQCKVASDL 867
            MK + Q   P   A+ +M+I  LPSP  AQK R+  +++G  +     A+  CDP GP+   V+K+      G   A GR+FSG +  G+++ I G   VP      +   +Q+T I MG ++  VE +P GN  A+ GL   I  +   T   + +  P         PV+ VAV+ K   DL
Sbjct:  235 MKELSQK-CPLYVAVNDMIIRFLPSPLEAQKNRIRVIWKGDWNSPVGKAMTACDPNGPVAFMVTKIKVDPHAGE-VATGRLFSGTLVRGMELHISG---VP------HTNRIQQTGIMMGAERIEVERIPAGNIAAVTGLRDAIVGS---TVSSDPNMTPFEIIKHVSEPVMTVAVEAKNMRDL 404          
BLAST of CB610519 vs. ExPASy Swiss-Prot
Match: EF2_SULAC (Elongation factor 2 OS=Sulfolobus acidocaldarius GN=fusA PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.793e-14
Identity = 65/230 (28.26%), Postives = 103/230 (44.78%), Query Frame = 1
Query:  214 NICMNDEKDKLW----PMLQKLGVTMKSEEKELM-GKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAH-------PIRAXXFSVSPVVRVAVQCKVASDL 867
            N+     KDK W    PM  K GV           G       + + +P   ALL+ +I  +P+P  +QKYR+  +++G LD   A A+ N DP GP+++ ++ M      G   A GRVFSG +  G +V      ++   K+   +  V    ++MG  +E  E++P GN  A +G+D      A  + E  VD               +   PVV ++V+ +   DL
Sbjct:  198 NVVFGSAKDK-WGFSVPMAGKRGVKFSDVVNAYTSGDKAKIEELASKVPIHEALLDAVIKFVPNPRDSQKYRIPKIWKGDLDSEIAKAMINADPNGPIVMMINDMKVDPHAG-LVATGRVFSGTLRAGEEV------WLVNAKRQQRILQVS---LYMGAIRELAEEIPVGNIAAALGMD------AARSGETGVDIRFKDSVLGSFEKLHYISEPVVTISVEPRNPKDL 410          
The following BLAST results are available for this feature:
BLAST of CB610519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
EF2_THEAC1.915e-1633.53Elongation factor 2 OS=Thermoplasma acidophilum GN... [more]
EF2_METM61.915e-1629.05Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_PICTO5.572e-1631.61Elongation factor 2 OS=Picrophilus torridus GN=fus... [more]
EF2_METS37.278e-1628.50Elongation factor 2 OS=Methanobrevibacter smithii ... [more]
RIA1_YEAST9.505e-1628.65Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
EF2_THEVO9.505e-1632.35Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_NANEQ1.241e-1528.77Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
EF2_METTH1.621e-1529.67Elongation factor 2 OS=Methanobacterium thermoauto... [more]
EF2_METTP6.161e-1532.61Elongation factor 2 OS=Methanosaeta thermophila (s... [more]
EF2_SULAC1.793e-1428.26Elongation factor 2 OS=Sulfolobus acidocaldarius G... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IaF_A10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IaF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610519 ID=CB610519; Name=CB610519; organism=Citrus sinensis; type=EST; length=868bp
GGGGGTTTGCATGGTTGGGCTTTTACCTTGACAAATTTTGCTAAGATGTA
TGCATCCAAGTTCGGAGTTGATGAGTCAAAGATGATGGAGAGGCTCTGGG
GTGAGAACTTCTTTGACCCTGCTACAAGGAAGTGGACCAGCAGGAACACT
GGCTCTCCCACTTGCAAGCGTGGTTTTGTCCAGTTCTGCTATGAACCCAT
CAAGCAGATCATCAACATTTGCATGAATGATGAGAAAGATAAGCTGTGGC
CTATGTTACAAAAGCTTGGTGTCACAATGAAGTCGGAAGAAAAGGAGTTG
ATGGGTAAGGCATTGATGAAGCGTGTGATGCAGACCTGGCTCCCTGCAAG
TAGTGCTCTTCTGGAAATGATGATCTTTCACCTTCCCTCTCCTGCCACGG
CCCAAAAGTACCGTGTTGAGAACTTGTATGAGGGTCCCCTTGATGATGCT
TATGCTAATGCCATCAGGAACTGTGATCCCGAGGGCCCTCTCATGCTCTA
TGTATCTAAGATGATTCCTGCGTCTGATAAGGGTAGATTCTTTGCTTTTG
GTCGTGTGTTCTCTGGCAAGGTTGCAACTGGTTTGAAGGTCAGGATCATG
GGTCCTAACTATGTCCCTGGTGAGAAGAAAGACTTGTATGTGAAGAGTGT
ACAAAGGACTGTTATTTGGATGGGAAAGAAGCAGGAAACTGTAGAGGATG
TGCCTTGTGGCAATACGGTCGCCATGGTTGGTTTGGATCAGTATATCACC
AAGAATGCTACCTTGACAAACGAGAAGGAAGTTGATGCCCATCCTATCCG
TGCTATNNAGTTCTCCGTCTCACCTGTGGTTCGTGTGGCTGTACAGTGCA
AAGTTGCATCTGATCTCC
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