CB610556

Overview
NameCB610556
Unique NameCB610556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.753e-40
Identity = 83/130 (63.85%), Postives = 97/130 (74.62%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            MSLIPS FGGRR++VFDP SLDVWDPF  F        PSS + E S F + R+DWKETP+AHVFKAD+PGL+          GR+LQISGER+ E+E+KND W RVERSSGK +RRFRLP+NAKV QVK
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDF------PFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVK 124          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.699e-40
Identity = 80/131 (61.07%), Postives = 96/131 (73.28%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            MSLIP  FGGRR+NVFDP SLD+WDPF  F      + P+S+   E S F + R+DWKETP+AHVFKAD+PGL+           R+LQISGER+ E+E+KND W RVERSSGKF RRFRLP+NAKV +VK
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVK 125          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.938e-39
Identity = 84/128 (65.62%), Postives = 96/128 (75.00%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFL-----SSALTNAPSSAR----ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            RR+NVFDP SLD+WDPFDGF      SS+ +  PS  R    ET+ FA ARIDWKETP+AHVFKAD+PGL+          G ILQISGER+KEQEEK D+W RVERSSGKFLRRFRLPDNAK +Q+K
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIK 132          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.531e-39
Identity = 80/131 (61.07%), Postives = 97/131 (74.05%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            MSLIPSIFGG R+NVFDP SLD+WDPF  F      + P+S+   E S F N R+DWKET +AHV KAD+PGL+           R+LQISGER+ E+E+KND W RV+RSSGKF+RRFRLP+NAKV+QVK
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVK 125          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.364e-39
Identity = 83/134 (61.94%), Postives = 103/134 (76.87%), Query Frame = 3
Query:   75 MSLIPSIF--GGRRTNVFDPVSLD-VWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            MSLIP+ +   GRR+N+FDP SLD +WDPF G L S L+  P S  A ET+ FANARIDWKETP+AHVFKADLPG++          G +L+ISG+R++E+EEKND W RVERSSG+F+R+FRLP+NAKV QVK
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFG-LPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVK 133          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.364e-39
Identity = 79/128 (61.72%), Postives = 93/128 (72.66%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSS---------ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            RR+NVFDP SLD+WDPFDGF   + + +  S         + ET+ FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGERSKEQEEK DKW RVERSSGKFLRRFRLP+N K +Q+K
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIK 132          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.256e-38
Identity = 83/130 (63.85%), Postives = 97/130 (74.62%), Query Frame = 3
Query:   75 MSLIPSIFGGRR-TNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            MSLIP IFG RR T+VFDP S+DV+DPF       L    S++ ETS FAN RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND W RVERSSGKF+RRFRLP+NAK+ QVK
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPF-----KELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVK 125          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.655e-38
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTN-VFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            MSLIP IFG RR++ +FDP S+DV+DPF       L    +++ ETS FAN RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+NAK+ QVK
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPF-----RELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVK 125          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 3.655e-38
Identity = 76/121 (62.81%), Postives = 91/121 (75.21%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFLSSALTNA--PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            RR+NVFDP SLD+WDPFDGF   + + +  P +  + + FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGER KEQEEK DKW RVERSSGKFLRRFRLP+N K +Q+K
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIK 125          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.655e-38
Identity = 75/119 (63.03%), Postives = 92/119 (77.31%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            RR+NVFDP SLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKW RVERSSG+F+RRFRLP+NAKV QVK
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVK 121          
The following BLAST results are available for this feature:
BLAST of CB610556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HSP11_SOYBN1.753e-4063.8517.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN8.699e-4061.0717.5 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ORYSJ1.938e-3965.6317.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP15_SOYBN2.531e-3961.0717.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_CHERU7.364e-3961.9418.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS181_ORYSJ7.364e-3961.7218.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_SOLPE1.256e-3863.8517.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLPE3.655e-3862.3117.7 kDa class I heat shock protein OS=Solanum per... [more]
HS174_ORYSJ3.655e-3862.8117.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ3.655e-3863.0316.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_E06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610556 ID=CB610556; Name=CB610556; organism=Citrus sinensis; type=EST; length=485bp
GGGGATCTNNAAATTGCTTGATCAAAGCATTTCCGAAGTTGTTGAGCAGA
TAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAG
TAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGG
AGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGGATCGCGTCGAGAGGAG
CAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGA
AACAGGTTAAGGGCCAGCATGGAAAATGGTGTGCT
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