CB610556

Overview
NameCB610556
Unique NameCB610556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.655e-38
Identity = 75/119 (63.03%), Postives = 92/119 (77.31%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            RR+NVFDP SLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKW RVERSSG+F+RRFRLP+NAKV QVK
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVK 121          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.002e-37
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            RR+NVFDP + D WDPFDG   S +    +S R+T+ FANAR+DWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKW RVERSSG+F+RRFRLP+NAKV QVK
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVP--ATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVK 120          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.176e-36
Identity = 76/126 (60.32%), Postives = 90/126 (71.43%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGF-------LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            RR N FDP SLD+WDP DGF        SS+ +  P +  + + FA ARIDWKETP+ HVFKAD+PGL+          G ILQISGERS+EQEEK+DKW RVERSSGKFLRRFRLP+N K +Q+K
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIK 130          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.536e-36
Identity = 76/130 (58.46%), Postives = 92/130 (70.77%), Query Frame = 3
Query:   75 MSLIPSIFGG-RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            MS+IPS F   RR+N+FDP SLDVWDPF    SS+L+      RE S   NAR+DW+ETP+AHVFKADLPGL+            +L+ISGER  E+E+KND W RVERSSG+F RRFRLP+N K+ QVK
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS------RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVK 124          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.619e-36
Identity = 79/132 (59.85%), Postives = 98/132 (74.24%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTN-VFDPVSLDVWDPFD--GFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            MSLIP IFG RR++ +FDP S+DV+DPF   GF S+       ++ E+S FAN RIDWKETP+ HVFK DLPGL+           R+LQISGER+ E+E+KNDKW R+ERSSGKF+RRFRLP+NAK+ QVK
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPST-------NSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVK 125          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.452e-34
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 3
Query:  123 DPVSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            DP SLDVWDPF  F  +++  +A S  +E S F + RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND+W RVERSSGKF+RRFRLP+NAK+ QVK
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVK 114          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.182e-34
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            RR+NVFDP + D+W DPFD F S     +  S+ ET+ FANAR+DWKETP+AHVFK DLPG++          G +L +SGERS+E+E+KNDKW RVERSSGKF+RRFRLP++AKV++VK
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS-ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVK 122          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.589e-33
Identity = 72/120 (60.00%), Postives = 90/120 (75.00%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            RRTNVFDP + D+W DPFD F  S +        ET+ FANAR+DWKETP+AHVFKADLPG++          G +L +SGER+KE+E+KNDKW RVERSSGKF+RRFRL ++AKV++VK
Sbjct:    5 RRTNVFDPFA-DLWADPFDTF-RSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK 122          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.886e-33
Identity = 72/131 (54.96%), Postives = 87/131 (66.41%), Query Frame = 3
Query:   75 MSLIPSIFGGRR--TNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            MSLIPS FG  R   ++FDP SLDVWDPF       L    S + ETS   NAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D W RVERSSG+F R+F+LP+N K+ QVK
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPF-----KELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVK 126          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.345e-32
Identity = 74/132 (56.06%), Postives = 87/132 (65.91%), Query Frame = 3
Query:   75 MSLIPSIFGGRR---TNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            MSLIPS FG  R    N+FDP SLDVWDPF           PSS+  +S  ANAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D W RVERSSG F R+FRLP+N K+ QVK
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKEL------QFPSSS--SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVK 124          
The following BLAST results are available for this feature:
BLAST of CB610556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HS16A_ORYSJ3.655e-3863.0316.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS16C_ORYSJ9.002e-3762.1816.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS177_ORYSJ1.176e-3660.3217.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17B_ARATH1.536e-3658.4617.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_SOLLC2.619e-3659.8517.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP11_MEDSA2.452e-3461.4018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16A_WHEAT4.182e-3460.0016.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS16B_WHEAT1.589e-3360.0016.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS178_ARATH7.886e-3354.9617.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH1.345e-3256.0617.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_E06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610556 ID=CB610556; Name=CB610556; organism=Citrus sinensis; type=EST; length=485bp
GGGGATCTNNAAATTGCTTGATCAAAGCATTTCCGAAGTTGTTGAGCAGA
TAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAG
TAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGG
AGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGGATCGCGTCGAGAGGAG
CAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGA
AACAGGTTAAGGGCCAGCATGGAAAATGGTGTGCT
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