CB610556

Overview
NameCB610556
Unique NameCB610556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.648e-22
Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQE---EKNDKWDRVERSSGKFLRRFRLPDNAKVKQV 458
            R  NV DP+S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R          G +L ISGER++E++   + +++W  VERSSGKF RRFRLP  A+V QV
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQV 120          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.437e-20
Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 3
Query:   99 GGRRTNVFDPVSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQV 458
            GG      +PVS+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R           ++L+ISG+R++  EEK ++W RVERSS +F+R  RLP NA    V
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGV 147          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.800e-19
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  225 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVKGQ 467
            AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+E+K D W RVERS GKF R+FRLP N  +  VK +
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAK 147          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 3
Query:  219 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVKGQ 467
            ++AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+++K D W RVERS GKF R+F+LP N  +  VK +
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAK 155          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.596e-17
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  201 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVKGQ 467
            R+TS   + AR+DWKET + H    D+PGL+            +L++SGER +E+E+K D+W RVERS GKF R+F+LPDN  ++ VK +
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAK 151          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  117 VFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            +FD ++ D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  +   +ERS   F  RF LPD+A V  V+
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVR 120          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.071e-13
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3
Query:  327 ILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQVK 461
            ILQISGER+ E+E+KND W RVERSSGKF+R FRLPDNAKV QVK
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVK 45          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.399e-13
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  186 APSSARETSQFANARIDWKETPQAHVFKADLPGL-RXXXXXXXXXXGRILQISGER-----SKEQEEKND--KWDRVERSSGKFLRRFRLPDNAKVKQV 458
            A ++A E +  A AR DWKETP+AHV   D+PG+ R           R+L++SGER     ++E+E + D  +W R ER++G+F RRFR+P  A V +V
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRV 157          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.314e-13
Identity = 53/143 (37.06%), Postives = 73/143 (51.05%), Query Frame = 3
Query:   54 LASQFAIMSLIPSIFGG--RRTNVFDPVSLDVWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQ--EEK--NDKWDRVERSSGKFLRRFRLPDNAKVKQV 458
            LAS  A  +L+P   GG  R   V +   L   DPF       L + P      + +  + AR+DW+ET  AH    D+PG+R           R+L+ISGER +E+  E+K   D W R ERS G+F R+ RLPDNA +  +
Sbjct:   20 LASTAADGALLPWFGGGGARDEAVPELGLLAAADPF-----RILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSI 157          
BLAST of CB610556 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.445e-12
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 3
Query:  183 NAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWDRVERSSGKFLRRFRLPDNAKVKQV 458
            NAPS    R+    A    D KE P ++VF  D+PGL+            +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA    +
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAI 123          
The following BLAST results are available for this feature:
BLAST of CB610556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HS166_ORYSJ1.648e-2247.1116.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ3.437e-2042.6218.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN3.800e-1951.8522.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA8.465e-1948.1922.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH1.596e-1745.5622.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS17B_ORYSJ3.932e-1640.5217.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HSP12_SOYBN1.071e-1380.00Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS219_ORYSJ1.399e-1342.4221.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ5.314e-1337.0623.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE3.445e-1239.3617.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_E06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610556 ID=CB610556; Name=CB610556; organism=Citrus sinensis; type=EST; length=485bp
GGGGATCTNNAAATTGCTTGATCAAAGCATTTCCGAAGTTGTTGAGCAGA
TAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAG
TAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGG
AGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGGATCGCGTCGAGAGGAG
CAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGA
AACAGGTTAAGGGCCAGCATGGAAAATGGTGTGCT
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