CB610622

Overview
NameCB610622
Unique NameCB610622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica GN=SNU13 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 85/122 (69.67%), Postives = 97/122 (79.51%), Query Frame = 3
Query:  108 NPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            NPKA+PLAD+ L   ILD+VQQA + +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPY+FVPSK ALGRACGV+RPVI+ SVTSN+ASQLK QI Q+KD IE+LLI
Sbjct:    5 NPKAFPLADAALTQQILDIVQQATHLRQLKKGANEATKTLNRGISEFIIMAADAEPIEILLHLPLLCEDKNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: SNU13_USTMA (13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 85/124 (68.55%), Postives = 99/124 (79.84%), Query Frame = 3
Query:  102 AVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            A NPKA+PLAD+ L   ILDL+QQA++YKQLKKGANEATKTLNRGI EFIVMAAD              EDKNVPYVFVPSK ALGRACGV+RPV++ SVT+NEA +L++QIQ +K AIE+LLI
Sbjct:    3 APNPKAFPLADATLTNQILDLIQQASHYKQLKKGANEATKTLNRGICEFIVMAADVEPIEIVLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVSASVTTNEARELQSQIQTVKLAIERLLI 126          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: SNU13_DEBHA (13 kDa ribonucleoprotein-associated protein OS=Debaryomyces hansenii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 87/124 (70.16%), Postives = 96/124 (77.42%), Query Frame = 3
Query:  102 AVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            A NPKA+PLADS L   ILD+VQQ+ N +QLKKGANEATKTLNRGISEFI+MAADT             EDKNVPYVFVPSK ALGRACGV+RPVIA SVT+NEAS +K QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVIAASVTTNEASAMKNQIYGIKDKIETLLI 126          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: SNU13_YEAST (13 kDa ribonucleoprotein-associated protein OS=Saccharomyces cerevisiae GN=SNU13 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.009e-39
Identity = 85/124 (68.55%), Postives = 97/124 (78.23%), Query Frame = 3
Query:  102 AVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            A NPKA+PLAD+ L   ILD+VQQAAN +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +KTQI  +KD IE LLI
Sbjct:    3 APNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETLLI 126          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: SNU13_KLULA (13 kDa ribonucleoprotein-associated protein OS=Kluyveromyces lactis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.832e-39
Identity = 83/124 (66.94%), Postives = 97/124 (78.23%), Query Frame = 3
Query:  102 AVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            A NPKA+PLAD+ L   ILD+VQQA+N +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +K+QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 126          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: SNU13_CANGA (13 kDa ribonucleoprotein-associated protein OS=Candida glabrata GN=SNU13 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.832e-39
Identity = 84/124 (67.74%), Postives = 95/124 (76.61%), Query Frame = 3
Query:  102 AVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            A NPKA+PLAD  L   ILD+VQQAAN +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +K QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADEKLSQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKNQIYAVKDKIETLLI 126          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: SNU13_CRYNE (13 kDa ribonucleoprotein-associated protein OS=Cryptococcus neoformans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.537e-39
Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 3
Query:  108 NPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            NPKA+PLA++ L   ILDL+QQA +YKQLKKGANEATKTLNRGI EFIVM AD              EDKNVPYVF+PSK ALGRACGV+RPVIA SVT+NEA +L  QIQ +K+ IEKLLI
Sbjct:    6 NPKAFPLANAQLTNQILDLIQQAQHYKQLKKGANEATKTLNRGICEFIVMTADVEPIEIVLHLPLLCEDKNVPYVFLPSKTALGRACGVSRPVIAASVTTNEARELNAQIQAVKNEIEKLLI 127          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: SNU13_ASHGO (13 kDa ribonucleoprotein-associated protein OS=Ashbya gossypii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.115e-38
Identity = 82/122 (67.21%), Postives = 96/122 (78.69%), Query Frame = 3
Query:  108 NPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            NPKA+PLAD+ L   ILD+VQQA+N +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +K+QI  +KD IE LLI
Sbjct:    6 NPKAFPLADAALTQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 127          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NH2L1_DROME (NHP2-like protein 1 homolog OS=Drosophila melanogaster GN=hoip PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.244e-38
Identity = 76/125 (60.80%), Postives = 96/125 (76.80%), Query Frame = 3
Query:   99 EAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            E VNPKA+PLAD+ L   I++L+QQA NY QL+KGANEATKTLNRG+++ +V+A D              EDKNVPYVFV SKQALGRACGV+RP++ACSVT+NE SQLK+QI  ++  IE+LL+
Sbjct:    3 EEVNPKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQEIERLLV 127          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NH2L1_DICDI (NHP2-like protein 1 homolog OS=Dictyostelium discoideum GN=DDB_G0282243 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.660e-32
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 3
Query:   90 MSGEAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 473
            M+  + N KA PLADS L +TILDL+QQ+ N  QLKKGANE TK ++R  +EF+V+AAD              EDKN+PYVFV SK  LGRAC V+RPV+AC+VT ++ SQLK+QI  +KD++++L I
Sbjct:    1 MADSSNNEKAKPLADSKLTLTILDLIQQSNNLGQLKKGANECTKAVSRSTAEFVVLAADAEPLEILLHIPLLCEDKNIPYVFVSSKSELGRACDVSRPVVACAVTVDDKSQLKSQITNVKDSLDRLWI 128          
The following BLAST results are available for this feature:
BLAST of CB610622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SNU13_YARLI3.466e-4069.6713 kDa ribonucleoprotein-associated protein OS=Yar... [more]
SNU13_USTMA3.466e-4068.5513 kDa ribonucleoprotein-associated protein OS=Ust... [more]
SNU13_DEBHA3.466e-4070.1613 kDa ribonucleoprotein-associated protein OS=Deb... [more]
SNU13_YEAST1.009e-3968.5513 kDa ribonucleoprotein-associated protein OS=Sac... [more]
SNU13_KLULA3.832e-3966.9413 kDa ribonucleoprotein-associated protein OS=Klu... [more]
SNU13_CANGA3.832e-3967.7413 kDa ribonucleoprotein-associated protein OS=Can... [more]
SNU13_CRYNE6.537e-3968.0313 kDa ribonucleoprotein-associated protein OS=Cry... [more]
SNU13_ASHGO1.115e-3867.2113 kDa ribonucleoprotein-associated protein OS=Ash... [more]
NH2L1_DROME3.244e-3860.80NHP2-like protein 1 homolog OS=Drosophila melanoga... [more]
NH2L1_DICDI2.660e-3253.91NHP2-like protein 1 homolog OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_D10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610622 ID=CB610622; Name=CB610622; organism=Citrus sinensis; type=EST; length=662bp
GGGGCTCTTCTTTCGCTTAAACCCTGGGACCTTTGTACGCTTCATTAGCT
GCCGCAAAAACCCTAGCCTCCGTCCCCGCCACCACGAAAATGTCAGGAGA
AGCAGTGAACCCTAAAGCTTACCCGCTAGCAGATTCTAATCTCATAATCA
CGATACTGGATCTCGTTCAGCAAGCTGCCAATTACAAGCAGCTCAAAAAG
GGCGCCAATGAAGCTACTAAGACTCTTAACAGAGGTATCTCCGAGTTTAT
TGTGATGGCTGCTGATACCGAGCCTCTGGAGATTCTTCTTCATCTTCCAC
TGCTTGCAGAGGACAAGAATGTTCCCTATGTTTTTGTCCCTTCAAAGCAG
GCTCTTGGCAGGGCATGTGGGGTCACAAGACCTGTCATTGCTTGCTCTGT
GACCTCAAATGAGGCGAGTCAGTTGAAGACTCAAATTCAACAGCTGAAGG
ATGCCATTGAGAAGCTCTTGATATGAATATAATGGGATTCATATTCGGTG
TGATGGGCCTCTTTGATGGTGGTTAGAGGCTTTGACTGATGGTGTAGTTG
TGCTGCTTGGAAATCTTCTATTATTAATCTTTGTATTTTTGTCTTTTATG
TTTTCTTGTCATGCGATCTGGGAAAGCTTTTGGAATCATATTTACCAGAA
CCTGCAATGAAT
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