CB610663

Overview
NameCB610663
Unique NameCB610663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.630e-78
Identity = 137/164 (83.54%), Postives = 149/164 (90.85%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            FMLSS APVIS E A HEQ S  EITNA FEP+SMMAKCDPR GKYMACCLM+RGDV PKDVN +VA IKTK+T+QFVDWCPTGFKCGINYQPPTVVP GDLAKV RAVCMISN+TA++EVFSRI+ KFDLMY+KRAFVHWYVGEGMEEGEF+EARED+AALEK
Sbjct:  267 FMLSSLAPVISLEMANHEQYSTAEITNAAFEPNSMMAKCDPRRGKYMACCLMFRGDVAPKDVNGSVAAIKTKKTIQFVDWCPTGFKCGINYQPPTVVPDGDLAKVDRAVCMISNSTAISEVFSRINKKFDLMYSKRAFVHWYVGEGMEEGEFNEAREDMAALEK 430          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.780e-78
Identity = 134/164 (81.71%), Postives = 150/164 (91.46%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++Y P+ISAEKAYHE LSV +ITN+ FEP++ M KCDPRHGKYMA CL+YRGDVVPKDVN A+A IKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCM+SN TA+AE +SR+D+KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALEK
Sbjct:  265 FPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQMVKCDPRHGKYMAVCLLYRGDVVPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEK 428          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 8.090e-78
Identity = 131/164 (79.88%), Postives = 150/164 (91.46%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +YAP+IS+E+AYHEQLSV EIT++ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVN A+A IKTKR +QFVDWCPTG K GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYV EGMEEGEF+EAREDLAALEK
Sbjct:  142 FPLVTYAPIISSERAYHEQLSVAEITSSCFEPNNQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRNIQFVDWCPTGVKVGINYQPPTVVPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEK 305          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.354e-77
Identity = 131/164 (79.88%), Postives = 149/164 (90.85%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++Y+P+ISAEKAYHEQLSV EIT+A FEP++ M KCDPRHGKYMACCL+YRGDVVPKDV A++A +KTKRT+QFVDWCPTGFK GINYQPPTVVPG DLAKV RAVCM+SN TA+AE ++R+DHK DLMYAKRAFVHWYVGEGMEE +FSEAREDLA LEK
Sbjct:  267 FPLTTYSPIISAEKAYHEQLSVGEITSACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVTASIANVKTKRTIQFVDWCPTGFKVGINYQPPTVVPGADLAKVSRAVCMLSNTTAIAEAWARLDHKVDLMYAKRAFVHWYVGEGMEERQFSEAREDLATLEK 430          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.436e-74
Identity = 125/164 (76.22%), Postives = 147/164 (89.63%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +YAP+IS+++AYHEQLSV EIT++ FEP++ M KCDP+ GKYMACC++YRGDVVPKDVN A+A IKT R++QFVDWCPTGFK GINYQPP   PGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYV EGMEEGEF+EAREDLAALEK
Sbjct:  264 FPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQQGKYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEK 427          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.280e-72
Identity = 123/140 (87.86%), Postives = 134/140 (95.71%), Query Frame = 3
Query:   78 ITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            ITNA FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:    1 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 140          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 5.079e-72
Identity = 125/164 (76.22%), Postives = 144/164 (87.80%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +YAP+ISA KA+HE  SV EITNA FEP++ M KCDPR+GKYMA CL+YRGD+V KDVN AV++I+TKRT+QFVDWCPTGFK G+ YQPP  VP GDLAKV RAVCM+SN T++AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FPLVTYAPLISAAKAHHEANSVAEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDIVTKDVNCAVSSIRTKRTIQFVDWCPTGFKLGVCYQPPQYVPNGDLAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 3.640e-70
Identity = 123/164 (75.00%), Postives = 143/164 (87.20%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +Y+PVISA+KA HE  SV +IT + FEP++ M KCDPR+GKYMA CL+YRGDVVPK+ +AAVAT+KTKRT+QFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN TA++E +S +DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct:  267 FPLVAYSPVISADKASHEANSVQDITMSCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKETHAAVATLKTKRTIQFVDWCPTGFKIGICYQPPQQVPNGDLAKVNRAVCMLSNTTAISEAWSALDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 430          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.754e-70
Identity = 124/164 (75.61%), Postives = 141/164 (85.98%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +YAP++SA KA HE  SV EI+ + FEP+S M KCDPR+GKYMA CL+YRGDVVPKDV+ AVAT+KTKRT+QFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN TA+AE +S + HKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct:  267 FPLVAYAPIVSAAKAAHEANSVQEISMSCFEPNSQMVKCDPRNGKYMATCLLYRGDVVPKDVHQAVATLKTKRTIQFVDWCPTGFKIGICYQPPQNVPNGDLAKVNRAVCMLSNTTAIAEAWSALSHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 430          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.059e-69
Identity = 119/164 (72.56%), Postives = 143/164 (87.20%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F +++ AP+ISAEKAY EQLSV ++T + FE S+ + KCDPR GKYMACCL+YRGDVVPKDVN A+A +K++ +VQFVDWCPTGFK GINYQPP VVPGGDLA+VQRAVCM+SN TA+ E ++R+DHKFDLMYAK+AF+HWY+ EGME GEF EAREDLAALEK
Sbjct:  274 FPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDLAALEK 437          
The following BLAST results are available for this feature:
BLAST of CB610663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
TBAN_GUITH1.630e-7883.54Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBA2_CAEEL2.780e-7881.71Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBA4_CHICK8.090e-7879.88Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_HOMAM2.354e-7779.88Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA2_CHICK2.436e-7476.22Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA_LYTPI2.280e-7287.86Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBA1_PNECA5.079e-7276.22Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA1_EMENI3.640e-7075.00Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA_MYCGR4.754e-7075.61Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBAL3_MOUSE1.059e-6972.56Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_G03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610663 ID=CB610663; Name=CB610663; organism=Citrus sinensis; type=EST; length=612bp
GGGATTTCATGCTTTCATCATATGCCCCTGTCATCTCTGCTGAAAAAGCA
TACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGAGCC
CTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGGCTT
GCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCCGCT
GTTGCCACTATCAAAACTAAGAGGACCGTGCAATTTGTTGACTGGTGCCC
AACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTACCTG
GAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACAAC
ACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAATTCGATCTCAT
GTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGAGG
AAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAGAT
TATGAGGAAGTTGGTGCAGAAGGAGTAGATGATGAGGATGATGGTGAAGA
ATATTGATGTACTGCTTCTGCTGATAACTATGAAGATGAGAAATATGTAC
ATTTTGCAAGGG
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