CB610663

Overview
NameCB610663
Unique NameCB610663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.359e-69
Identity = 124/164 (75.61%), Postives = 139/164 (84.76%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +YAPVISA KA HE  SV E+T + FEP++ M KCDPRHGKYMA CL+YRGDVVP D +AAVAT+KTKRT+QFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN TA+AE +S +  KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct:  267 FPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 430          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 5.256e-69
Identity = 115/164 (70.12%), Postives = 143/164 (87.20%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F ++++AP++SA+KAYHEQ SV +IT A FE S+ + KCDPR GKYMACCL+YRGDVVPK+VNAA+A  K++ +VQFVDWCPTGFK GIN +PPTV+PGGDLAKV R++CM+SN TA+ E ++R+DHKFDLMYAKRAF+HWY+ EGMEE EF EAREDLAALE+
Sbjct:  274 FPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDLAALER 437          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 1.997e-68
Identity = 118/164 (71.95%), Postives = 141/164 (85.98%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISA++A+HE LSV +IT+  FE ++ M KCDP  GKYMA CL+YRGDVVPKDVNAA++++K KR + FVDWCPTGFK GINYQ P  V GGDLAKV RAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHW+VGEGMEEGEF EAR+DLAALEK
Sbjct:  270 FPLATYAPVISADRAHHEPLSVQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEK 433          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 2.608e-68
Identity = 117/164 (71.34%), Postives = 140/164 (85.37%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +Y+P++SA KA+HE  SV EITN  FEP + M KCDPR G+YMA CL+YRGDV+P+DV AAV +IK++RT+QFVDWCPTGFK GI Y+PP  VPG  +AKV RAVCM+SN T++AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct:  271 FPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 434          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.449e-68
Identity = 118/164 (71.95%), Postives = 140/164 (85.37%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++ AP++S +KA HE  SV E+T + FEP + M KCDPR GKYMAC L+YRGDVVPKD NAAVA IKTKRT+QFVDWCPTGFK GI  +PP  VPGGDLAKV+R++CM+SN TA++  +SR+DHKFDL+Y+KRAFVHWYVGEGMEEGEFSEAR+DLAALEK
Sbjct:  266 FPLATLAPIVSVDKAGHESNSVAEMTYSCFEPGNQMVKCDPRDGKYMACALLYRGDVVPKDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPPAHVPGGDLAKVKRSMCMLSNTTAISSAWSRLDHKFDLLYSKRAFVHWYVGEGMEEGEFSEARQDLAALEK 429          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.208e-67
Identity = 117/164 (71.34%), Postives = 138/164 (84.15%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +YAP++SA KA+HE  SV EITN  FEP + M KCDPR G+YMA CL+YRGDV+P+DV AAV TIK KRT+QFVDWCPTGFK GI  +PP  + G ++AKV RAVCM+SN T++AE +SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct:  267 FPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 430          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 2.884e-67
Identity = 121/164 (73.78%), Postives = 138/164 (84.15%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +Y+PVISA KA HE  SV E+T + FEP++ M KCDPRHGKYMA CL+YRGDVVP D +AAVAT+KTKRT+QFVDWCPTGFK GI YQ P  VP GDLAKV RAVCM+SN TA+AE +S +  KFDLM++KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct:  267 FPLVAYSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDLAALER 430          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 8.391e-67
Identity = 121/163 (74.23%), Postives = 136/163 (83.44%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 494
            F L +YAPVISA KA HE  SV E+T + FEP++ M KCDPRHGKYMA CL+Y GDVVP D +AAVA++KTKRT+QFVDWCPTGFK GI YQPP  VP GDLAKV RAVCM+SN TA+AE +S +  KFDLMY+KRAFVHWYVGEGMEEGEFSEARE LAALE
Sbjct:  267 FPLVAYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYGGDVVPNDAHAAVASLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREVLAALE 429          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.582e-65
Identity = 116/164 (70.73%), Postives = 132/164 (80.49%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L SYAP++S  KA+HE  SV EITNA FEP + M KCDPR GKYMA CL+YRGDVV +DV  AVA +K K+TVQ VDWCPTGFK GI Y+PPT  P   L+ V RAVCM+SN TA+A+ + RID KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDLAALE+
Sbjct:  269 FPLVSYAPILSKSKAHHESNSVGEITNACFEPGNQMVKCDPRVGKYMATCLLYRGDVVTRDVQTAVAQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLSSVSRAVCMLSNTTAIADAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALER 432          
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.699e-65
Identity = 115/164 (70.12%), Postives = 136/164 (82.93%), Query Frame = 3
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L+SYAP++SA +  HEQ SV E+T + FE  + M KCD + GKYMACCL+YRGDVVPKD  AAVA+IKTKRT+QFVDWCPTGFK G+  + P  VPGGDLAKV R++CM+SN TA+A  ++R+D+KFDLMY KRAFVHWYVGE MEEGEFSEAREDLAALEK
Sbjct:  265 FPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLSNTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDLAALEK 428          
The following BLAST results are available for this feature:
BLAST of CB610663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
TBA2_NEUCR2.359e-6975.61Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBAL3_HUMAN5.256e-6970.12Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA8_CAEEL1.997e-6871.95Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA1_SCHPO2.608e-6871.34Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBAA_SCHCO4.449e-6871.95Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA2_SCHPO2.208e-6771.34Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA_GIBZE2.884e-6773.78Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA_SORMA8.391e-6774.23Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA_ASHGO1.582e-6570.73Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBAB_SCHCO2.699e-6570.12Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_G03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610663 ID=CB610663; Name=CB610663; organism=Citrus sinensis; type=EST; length=612bp
GGGATTTCATGCTTTCATCATATGCCCCTGTCATCTCTGCTGAAAAAGCA
TACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGAGCC
CTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGGCTT
GCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCCGCT
GTTGCCACTATCAAAACTAAGAGGACCGTGCAATTTGTTGACTGGTGCCC
AACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTACCTG
GAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACAAC
ACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAATTCGATCTCAT
GTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGAGG
AAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAGAT
TATGAGGAAGTTGGTGCAGAAGGAGTAGATGATGAGGATGATGGTGAAGA
ATATTGATGTACTGCTTCTGCTGATAACTATGAAGATGAGAAATATGTAC
ATTTTGCAAGGG
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