CB610663

Overview
NameCB610663
Unique NameCB610663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 4.280e-87
Identity = 151/164 (92.07%), Postives = 159/164 (96.95%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            FML+SYAPVISAEKA+HEQLSV E+TN VF+PSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVA IKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRA+CMISN TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE EFSEAREDLAALEK
Sbjct:  267 FMLASYAPVISAEKAFHEQLSVAELTNTVFDPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAVIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEVEFSEAREDLAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 4.280e-87
Identity = 150/164 (91.46%), Postives = 158/164 (96.34%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            FMLSSYAP+ISAEKAYHEQLSV EITNA FEP+SMM KCDP HGKYMACCLMYRGDVVPKDVNA+VATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPG DLAKVQRAVCMISN+TA+ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPLHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGVDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 7.300e-87
Identity = 150/164 (91.46%), Postives = 161/164 (98.17%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F+L++YAPVISAEKAYHEQLSV EI+NAVFEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDW PTGFKCGINYQPPTVVPGGDLAKVQRAVCMI+N+TA+AEVF+RIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FVLTTYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 7.300e-87
Identity = 151/164 (92.07%), Postives = 158/164 (96.34%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            FML+SYAPVISAEKA+HEQLSV E+TN VFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDV AAVA IKTKRT+QFVDWCPTGFKCGINYQ P+VVPGGDLAKVQRA+CMISN TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FMLASYAPVISAEKAFHEQLSVAELTNTVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVTAAVAVIKTKRTIQFVDWCPTGFKCGINYQAPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 7.300e-87
Identity = 154/164 (93.90%), Postives = 159/164 (96.95%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            FMLSS APVISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVP GDLAKV RAVCMISN+TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FMLSS-APVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 429
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 9.534e-87
Identity = 148/164 (90.24%), Postives = 157/164 (95.73%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            FML+SYAP+ISAEKAYHEQLSV EITN+VFEP+ MM  CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM++N TA+AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTNCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.124e-86
Identity = 147/164 (89.63%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            FML+SYAP+ISAEKAYHEQLSV EITN+VFEP+ MM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPPT VPGGDLA+VQRAVCM++N TA+AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL ALEK
Sbjct:  267 FMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTAVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLVALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 4.732e-86
Identity = 148/164 (90.24%), Postives = 159/164 (96.95%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            FMLSSYAP+ISAEKAYHEQLSV EITN+ FEP++MMAKCDPRHGKYMAC +MYRGDVVPKDVNA++ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 4.006e-85
Identity = 147/164 (89.63%), Postives = 158/164 (96.34%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            FMLSSYAP+ISAEKAYHEQLSV EITN+ FEP++MMAKCDPRHGKYMAC +MYRGDVVPKDVNA++ATIKTKRT+QFVDWCPTGFK GINYQP TVVPGGDLAKV RAVCMISN+TA+AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPSTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 4.429e-84
Identity = 150/164 (91.46%), Postives = 157/164 (95.73%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            FMLSSY PVISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKYMACC+M+RGDVVPKDVNAAVATIKTKRT+QFVDW P GFK GINYQPPTVVPGGDLAKV RAVCMISN+TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FMLSSYGPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPRHGKYMACCMMFRGDVVPKDVNAAVATIKTKRTIQFVDWSP-GFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 429
The following BLAST results are available for this feature:
BLAST of CB610663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
TBAE_PHYPO4.280e-8792.07Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]
TBA2_CHLRE4.280e-8791.46Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]
TBA_TRYCR7.300e-8791.46Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBAN_PHYPO7.300e-8792.07Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBA2_STYLE7.300e-8793.90Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA2_PELFA9.534e-8790.24Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA1_PELFA2.124e-8689.63Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA_TETTH4.732e-8690.24Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_TETPY4.006e-8589.63Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]
TBA_EUPVA4.429e-8491.46Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_G03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610663 ID=CB610663; Name=CB610663; organism=Citrus sinensis; type=EST; length=612bp
GGGATTTCATGCTTTCATCATATGCCCCTGTCATCTCTGCTGAAAAAGCA
TACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGAGCC
CTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGGCTT
GCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCCGCT
GTTGCCACTATCAAAACTAAGAGGACCGTGCAATTTGTTGACTGGTGCCC
AACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTACCTG
GAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACAAC
ACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAATTCGATCTCAT
GTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGAGG
AAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAGAT
TATGAGGAAGTTGGTGCAGAAGGAGTAGATGATGAGGATGATGGTGAAGA
ATATTGATGTACTGCTTCTGCTGATAACTATGAAGATGAGAAATATGTAC
ATTTTGCAAGGG
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