CB610663

Overview
NameCB610663
Unique NameCB610663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.198e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.198e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1B_PIG (Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.198e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1B_MOUSE (Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 2.198e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1B_MERUN (Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.198e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1B_MACFA (Tubulin alpha-1B chain OS=Macaca fascicularis GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.198e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1B_HUMAN (Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.198e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1B_CRIGR (Tubulin alpha-1B chain OS=Cricetulus griseus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.198e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1B_BOVIN (Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 2.198e-83
Identity = 142/164 (86.59%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 3.749e-83
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHK DLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKLDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
The following BLAST results are available for this feature:
BLAST of CB610663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
TBA_TORMA2.198e-8386.59Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1[more]
TBA1B_RAT2.198e-8386.59Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tub... [more]
TBA1B_PIG2.198e-8386.59Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=... [more]
TBA1B_MOUSE2.198e-8386.59Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b P... [more]
TBA1B_MERUN2.198e-8386.59Tubulin alpha-1B chain OS=Meriones unguiculatus GN... [more]
TBA1B_MACFA2.198e-8386.59Tubulin alpha-1B chain OS=Macaca fascicularis GN=T... [more]
TBA1B_HUMAN2.198e-8386.59Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B P... [more]
TBA1B_CRIGR2.198e-8386.59Tubulin alpha-1B chain OS=Cricetulus griseus GN=TU... [more]
TBA1B_BOVIN2.198e-8386.59Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2[more]
TBA3_BOVIN3.749e-8386.59Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_G03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610663 ID=CB610663; Name=CB610663; organism=Citrus sinensis; type=EST; length=612bp
GGGATTTCATGCTTTCATCATATGCCCCTGTCATCTCTGCTGAAAAAGCA
TACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGAGCC
CTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGGCTT
GCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCCGCT
GTTGCCACTATCAAAACTAAGAGGACCGTGCAATTTGTTGACTGGTGCCC
AACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTACCTG
GAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACAAC
ACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAATTCGATCTCAT
GTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGAGG
AAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAGAT
TATGAGGAAGTTGGTGCAGAAGGAGTAGATGATGAGGATGATGGTGAAGA
ATATTGATGTACTGCTTCTGCTGATAACTATGAAGATGAGAAATATGTAC
ATTTTGCAAGGG
back to top