CB610663

Overview
NameCB610663
Unique NameCB610663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 3.749e-83
Identity = 141/164 (85.98%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQL+V EITNA FEP++ M KCDPRHGKYM+CC++YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 3.749e-83
Identity = 141/164 (85.98%), Postives = 156/164 (95.12%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQL+V EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 6.395e-83
Identity = 142/164 (86.59%), Postives = 154/164 (93.90%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +YAPVISAEKAYHE LSV EITNA FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  267 FPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 8.352e-83
Identity = 141/164 (85.98%), Postives = 154/164 (93.90%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRT+QFVDWCPTGFK GINYQPPT VPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 8.352e-83
Identity = 141/164 (85.98%), Postives = 154/164 (93.90%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L +Y+P+ISAEKAYHEQLSV EITNA FEPS+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+A IKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  142 FPLVTYSPIISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 305
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 8.352e-83
Identity = 141/164 (85.98%), Postives = 155/164 (94.51%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 8.352e-83
Identity = 141/164 (85.98%), Postives = 155/164 (94.51%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 8.352e-83
Identity = 141/164 (85.98%), Postives = 155/164 (94.51%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 8.352e-83
Identity = 141/164 (85.98%), Postives = 155/164 (94.51%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
[Close]
BLAST of CB610663 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 8.352e-83
Identity = 141/164 (85.98%), Postives = 155/164 (94.51%), Query Frame = 3 
Query:    6 FMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 497
            F L++YAPVISAEKAYHEQLSV EITNA FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEK
Sbjct:  267 FPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430
The following BLAST results are available for this feature:
BLAST of CB610663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
TBA2_PATVU3.749e-8385.98Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA1C_RAT3.749e-8385.98Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tub... [more]
TBAT_ONCMY6.395e-8386.59Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA_XENTR8.352e-8385.98Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA8_CHICK8.352e-8385.98Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA4A_RAT8.352e-8385.98Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE8.352e-8385.98Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA8.352e-8385.98Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN8.352e-8385.98Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN8.352e-8385.98Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_G03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610663 ID=CB610663; Name=CB610663; organism=Citrus sinensis; type=EST; length=612bp
GGGATTTCATGCTTTCATCATATGCCCCTGTCATCTCTGCTGAAAAAGCA
TACCATGAACAGCTTTCAGTTCCAGAGATCACAAATGCAGTCTTTGAGCC
CTCAAGCATGATGGCCAAATGTGACCCCAGGCACGGGAAGTACATGGCTT
GCTGCTTGATGTACCGAGGAGATGTTGTCCCCAAGGATGTTAATGCCGCT
GTTGCCACTATCAAAACTAAGAGGACCGTGCAATTTGTTGACTGGTGCCC
AACTGGCTTCAAATGTGGTATTAACTATCAGCCTCCAACTGTTGTACCTG
GAGGTGACCTGGCCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACAAC
ACAGCAGTGGCTGAAGTGTTCTCTCGCATTGATCACAAATTCGATCTCAT
GTATGCCAAGAGGGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGAGG
AAGGTGAATTCTCAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAGAT
TATGAGGAAGTTGGTGCAGAAGGAGTAGATGATGAGGATGATGGTGAAGA
ATATTGATGTACTGCTTCTGCTGATAACTATGAAGATGAGAAATATGTAC
ATTTTGCAAGGG
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