CB610673

Overview
NameCB610673
Unique NameCB610673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610673 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.500e-18
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  313 LQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 531
            LQISG+R +EKEDKNDTWHRVERSSG F R FRLP+N K+DQ+KASME+G                 AIEISG
Sbjct:    2 LQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB610673 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.397e-17
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 1
Query:  253 ADLPGLXXXXXXXXXXXXXXLQISGQRKIEKE--DKNDT-WHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIEISG 531
            ADLPG+              L ISG+R  E++   KND  WH VERSSG F RRFRLP   ++DQ+ ASM++G                 AI ISG
Sbjct:   55 ADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          

HSP 2 Score: 41.5874 bits (96), Expect = 4.397e-17
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 2
Query:   80 RRSSVSDPFSLDVW---DPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHV 247
            R  +V DP S+D W   DPF       G   +L+ + P     + N RVDWKETP AHV
Sbjct:    5 RSGNVLDPMSVDFWADADPF-------GAVRSLAERCP----VLTNVRVDWKETPTAHV 52          
BLAST of CB610673 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.360e-17
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  247 VKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 462
            +  D+PGL              L++SG+RK E++ K D WHRVERS G F R+F+LP+NV +D +KA ME+G
Sbjct:   88 IMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENG 159          

HSP 2 Score: 33.8834 bits (76), Expect = 7.360e-17
Identity = 26/66 (39.39%), Postives = 33/66 (50.00%), Query Frame = 2
Query:   53 SLIPSFFGNRRSSVSDPFSLDVWDPFRDFP-FPSGYSSALSSQFPPETSAVVNARVDWKETPEAHV 247
            SL+P F  +  + +SD +S    DPFR     P G      S        + +ARVDWKETPE HV
Sbjct:   29 SLLP-FIDSPNTLLSDLWSDRFPDPFRVLEQIPYGVEKHEPS------ITLSHARVDWKETPEGHV 87          
BLAST of CB610673 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.367e-17
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  247 VKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 462
            +  D+PGL              L++SG+RK E+E K D WHRVERS G F R+FRLP+NV +D +KA +E+G
Sbjct:   80 IMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENG 151          

HSP 2 Score: 33.113 bits (74), Expect = 7.367e-17
Identity = 22/53 (41.51%), Postives = 24/53 (45.28%), Query Frame = 2
Query:  113 DVW-----DPFR---DFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHV 247
            D+W     DPFR     PF      A  +  P        ARVDWKETPE HV
Sbjct:   35 DLWSDRFPDPFRVLEHIPFGVDKDEASMAMSP--------ARVDWKETPEGHV 79          
BLAST of CB610673 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.895e-15
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  247 VKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 462
            +  D+PGL              L++SG+RK E+E K D WHRVERS G F R+F+LP+NV M+ +KA +E+G
Sbjct:   84 IMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENG 155          

HSP 2 Score: 28.4906 bits (62), Expect = 2.895e-15
Identity = 17/45 (37.78%), Postives = 22/45 (48.89%), Query Frame = 2
Query:  113 DVWDPFRDFPFPSGYSSALSSQFPPETSAVVN-ARVDWKETPEAH 244
            D+W     FP P      +      +TS  ++ ARVDWKET E H
Sbjct:   40 DLW--LDRFPDPFKILERIPLGLERDTSVALSPARVDWKETAEGH 82          
BLAST of CB610673 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 9.217e-13
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 1
Query:  253 ADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 462
            AD+PG+              L+ISGQR    E+K + WHRVERSS  F R  RLP N   D + A++++G
Sbjct:   85 ADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNG 154          

HSP 2 Score: 33.8834 bits (76), Expect = 9.217e-13
Identity = 20/54 (37.04%), Postives = 29/54 (53.70%), Query Frame = 2
Query:   98 DPFSLDVWDPFRDF----PFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHV 247
            +P S+D+ +PF D      F +  S+A ++   P T     A +DWKET  AHV
Sbjct:   34 EPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPST-----ASMDWKETAAAHV 82          
The following BLAST results are available for this feature:
BLAST of CB610673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
HSP12_SOYBN3.500e-1861.64Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS166_ORYSJ4.397e-1741.6716.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_PEA7.360e-1745.8322.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP41_SOYBN7.367e-1747.2222.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP22_ARATH2.895e-1545.8322.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS189_ORYSJ9.217e-1341.4318.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_E05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610673 ID=CB610673; Name=CB610673; organism=Citrus sinensis; type=EST; length=636bp
GGGGATCAGCAGCAAAATACCGAAAGCCGTATCACTCTATTGAGAAACGA
TGTCGTTGATTCCAAGCTTCTTCGGAAACCGACGCAGCAGTGTCTCTGAT
CCATTTTCACTCGACGTTTGGGATCCATTCAGGGACTTCCCTTTCCCTTC
CGGTTATTCGTCTGCGCTGTCCTCTCAGTTCCCTCCAGAAACCTCTGCTG
TCGTTAATGCCCGCGTGGACTGGAAGGAAACCCCGGAAGCCCACGTGTCA
AGGCCGATCTTCCGGGGCTCCGGAAAGAGGAAGTGAAGGTCGAGGTCGAA
GACGACAGGGTGCTTCAGATAAGCGGTCAGAGGAAGATTGAGAAGGAAGA
CAAGAACGACACGTGGCATCGCGTTGAGCGCAGCAGTGGCATGTTCTCAA
GGAGGTTCAGGTTACCTGAGAATGTGAAGATGGATCAGATTAAGGCTTCC
ATGGAGAGTGGTGTGCTCACTGTTACTGTTCCGAAAGTGGAGGTGACCAA
ACCTGATGTTAAGGCTATCGAAATCTCTGGTTAAACCAGTGTCTGTCTGT
ATGTCTTTATGCATACTTGTATAAGGATGCTGTGATGTTTTGGTTTTGTA
ATTTGCTTGCATGAATGTTTGTGTAATGGGATTCTG
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