CB610693

Overview
NameCB610693
Unique NameCB610693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610693 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  285 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLN-KFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA---DVLPE---TKDWRESGIVSPVKDQGHCGSCWTFSTTGSDEAAYHQAFGKGISLSEQQLVN 695
            +  F +R+GK +    E   RF  F +N+      N +       ++ KFAD + +EF +  L    +  A    +HK      D  P    + DWR+ G V+PVK+QG CGSCW FS  G+ E  +  +    +SLSEQ LV+
Sbjct:   42 YGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNP--DYYARHLKDHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVS 183          
BLAST of CB610693 vs. ExPASy Swiss-Prot
Match: CATK_BOVIN (Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 3
Query:  300 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSDEAAYHQAFGKGISLSEQQLVN 695
            + Y K Y S  +   R   + KNL  I   N +      +Y L +N   D + EE  +   G     S +   +     D     P++ D+R+ G V+PVK+QG CGSCW FS+ G+ E    +  GK ++LS Q LV+
Sbjct:   31 KTYRKQYNSKGDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPASRSRSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVD 169          
BLAST of CB610693 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  525 DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSDEAAYHQAFGKGISLSEQQLVN 695
            D LP++ DWRE+G V PVK+QG CGSCW FST  + E       G  ISLSEQQLV+
Sbjct:    1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVD 57          
BLAST of CB610693 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 3
Query:  309 GKIYESVEEMKLRFATFSKNLDLIRSTNCK---GL-SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLT-------ADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSDEAAYHQAFGKGISLSEQQLVN 695
            GK Y+  +E   R A F  N  +    N K   GL SY   LN  AD + EEF   R G         +G  + +       ++ LP+  DWR  G V+PV++QG CGSC+ F+T  + EA + Q  G+ + LS Q +V+
Sbjct:   99 GKHYDQ-KENNFRMAIFESNELMTERINKKYEQGLVSYTTALNDLADLTDEEFMV-RNGLRLPNQTDLRGKRQTSEFYRYDKSERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVD 236          
BLAST of CB610693 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 48/145 (33.10%), Postives = 66/145 (45.52%), Query Frame = 3
Query:  303 RYGKIYESVEEMKLRFATFS--KNLDLIRSTNCKGLS-YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTA-----------DVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSDEAAYHQAFGKGISLSEQQLVN 695
            +Y K+Y   EE+  R       K ++L    N  G + Y + +N FAD + EEF+   +G       T K   K              D LP+  DWR  G V+ V+ QG C SCW F  TG+ E    +  GK I LS Q L++
Sbjct:   35 KYEKLYSPEEEVLKRVVWEENVKKIELHNRENSLGKNTYTMEINDFADMTDEEFKDMIIGFQLPVHNTEKRLWKRALGSFFPNSWNWRDALPKFVDWRNEGYVTRVRKQGGCSSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLID 179          
BLAST of CB610693 vs. ExPASy Swiss-Prot
Match: CATK_RABIT (Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 3
Query:  300 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSDEAAYHQAFGKGISLSEQQLVN 695
            + Y K Y S  +   R   + KNL  I   N +      +Y L +N   D + EE  +   G     S +   +     D     P++ D+R+ G V+PVK+QG CGSCW FS+ G+ E    +  GK ++LS Q LV+
Sbjct:   31 KTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSRSHSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVD 169          
BLAST of CB610693 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  300 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSDEAAYHQAFGKGISLSEQQLVN 695
            + + K Y S  +   R   + KNL  I + N +      +Y L +N   D + EE  +   G     S +   +   T +    +P++ D+R+ G V+PVK+QG CGSCW FS+ G+ E    +  GK ++LS Q LV+
Sbjct:   31 KTHQKQYNSKVDEISRRLIWEKNLKQISAHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLRIPPSRSYSNDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVD 169          
BLAST of CB610693 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 39/99 (39.39%), Postives = 48/99 (48.48%), Query Frame = 3
Query:  405 SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSDEAAYHQAFGKGISLSEQQLV 692
            S++L +N   D + EE  R   G     S           D     P   DWR  G V+PVKDQG CGSCW FS+ G+ E    +  GK +SLS Q LV
Sbjct:   75 SFQLAMNYLGDMTSEEVVRTMTGLRVPRSRPRPNGTLYVPDWSSRAPAAVDWRRKGYVTPVKDQGQCGSCWAFSSVGALEGQLKRRTGKLLSLSPQNLV 173          
BLAST of CB610693 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 3
Query:  300 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV---LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSDEAAYHQAFGKGISLSEQQLVN 695
            + Y K Y S  +   R   + KNL  I   N +      +Y L +N   D + EE  +   G     S +   +     D     P++ D+R+ G V+PVK+QG CGSCW FS+ G+ E    +  GK ++LS Q LV+
Sbjct:   32 KTYRKQYNSKVDELSRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSHSRSNDTLYIPDWESRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVD 170          
The following BLAST results are available for this feature:
BLAST of CB610693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
CYSP1_LEIPI3.728e-1133.33Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CATK_BOVIN3.728e-1132.37Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2[more]
CPGP2_ZINOF4.869e-1157.89Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATL_BRUPA4.869e-1135.00Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CATQ_RAT8.306e-1133.10Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATK_RABIT8.306e-1132.37Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 ... [more]
CATK_MOUSE8.306e-1131.65Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
CATK_CHICK8.306e-1139.39Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
CATK_CANFA8.306e-1132.37Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_B07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610693 ID=CB610693; Name=CB610693; organism=Citrus sinensis; type=EST; length=695bp
GGGGGCCGAATAATACTATTGTTCATAGGGATCATTCATTTAATCCGAAG
CCCTTGAGTGCAGTGTGCTCTCTCCAAACAAAGCAGACACAATCATTAGG
CATGGCTCGCCCCGTACAGTTGGTCTCGTCCGTCATCTTGTTGCTTTGCT
GCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTCGACGACTCCAATCCG
ATCAGATTGGTATCATCGGACGGTCTCCGTGACTTCGAGACCTCCGTCCT
CCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCTTTGCCCGTTTTGCTC
GCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAGATGAAGCTCCGGTTC
GCGACTTTCTCCAAGAACTTGGATTTAATCAGATCTACCAATTGTAAAGG
CCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTGACTGGAGCTGGGAAG
AGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAACTGCTCTGCCACTACA
AAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAACGAAAGACTG
GAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACCAAGGTCACTGTGGAT
CTTGCTGGACTTTCAGCACGACTGGATCTGATGAGGCTGCTTACCACCAG
GCCTTTGGAAAGGGTATCTCTTTGTCAGAACAGCAGCTTGTAAAC
back to top