CB610695

Overview
NameCB610695
Unique NameCB610695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCS 366
            I+C QV   ++PC+SY   G     ACC G+R+LN+A+ TT DRRT CNC+K  A  I GL+      +P  C    PY ++  +DCS
Sbjct:   28 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCS 115          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCS 366
            I+C QV   ++PC+SY   G     ACC G+R+LN+A+ TT DRRT CNC+K  A  I GL+      +P  C    PY ++  +DCS
Sbjct:   27 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCS 114          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCSK 369
            ITC QV   + PC++Y   G     ACC G+R+L AA+ TT DRRT CNC+K  A  I GL+      +P  C    PY ++  +DCS+
Sbjct:   26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSR 114          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCSK 369
            ITC QV   + PC++Y   G     ACC G+R+L AA+ TT DRRT CNC+K  A  I GL+      +P  C    PY ++  +DCS+
Sbjct:   26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSR 114          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDC 363
            ITC QV+  L PCI+Y   GG V   CC G+R+LN A+KTT DR+  CNC+K     I GL+ +    LP  C    PYK++   DC
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDC 87          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.209e-15
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISYGVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCS 366
            ITC  V+  L PCI Y + GG +   CC GI+ALNAA+ TT DR+T CNC+K  A  I G++Y +   LP +C    PY ++   +C+
Sbjct:   28 ITCGMVSSKLAPCIGY-LKGGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCN 114          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.062e-15
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISY----GVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCS 366
            +TC QVT  L PC+ Y    G LGG     CC G++ L  ++KTT DR+T C C+K  A  I G+D ++   +P +C+   PYK++   DCS
Sbjct:   25 LTCGQVTAGLAPCLPYLQGRGPLGG-----CCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCS 111          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISY--GVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCS 366
            +T  QVT  L PCI+Y  G   GAV P CC GI++LN+A++TT  R+  C C+K  AA I G+++   + LP  C    PYK++   DC+
Sbjct:   28 VTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCN 117          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISY----GVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCS 366
            +TC QVT  L PC+ Y    G LGG     CC G++ L  ++KTT DR+T C C+K  A  I G+D ++   +P +C+   PYK++   DCS
Sbjct:   25 LTCGQVTAGLAPCLPYLQGRGPLGG-----CCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCS 111          
BLAST of CB610695 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.517e-15
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  103 ITCEQVTIWLTPCISY--GVLGGAVQPACCEGIRALNAASKTTEDRRTQCNCVKEGAARIPGLDYDRVNMLPDICRSKCPYKLTHDLDCS 366
            +T  QVT  L PCI+Y  G   GAV P CC GI++LN+A++TT  R+  C C+K  AA I G+++   + LP  C    PYK++   DC+
Sbjct:   24 VTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCN 113          
The following BLAST results are available for this feature:
BLAST of CB610695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
NLT2A_ORYSJ2.436e-1643.18Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLT2B_ORYSJ3.181e-1643.18Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP1_ORYSJ4.155e-1642.70Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI4.155e-1642.70Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
LTP1_MORNI5.426e-1645.98Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_SPIOL1.209e-1544.32Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP1_SOLPN2.062e-1541.30Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP2_GOSHI3.517e-1543.33Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_SOLLC3.517e-1541.30Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_GOSHI3.517e-1543.33Non-specific lipid-transfer protein OS=Gossypium h... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_B09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610695 ID=CB610695; Name=CB610695; organism=Citrus sinensis; type=EST; length=494bp
GGGGAATGCATAAACCATAATTACAATGGCACAGTGTCTCTTGCAACAGT
GCTATTGTTATTGTTGGCTGCCACTACGGCTCCCCTGAATGTAGCAACAG
CAATAACATGTGAGCAAGTGACAATCTGGCTGACACCATGCATCAGCTAT
GGTGTATTAGGTGGGGCTGTTCAGCCAGCTTGTTGTGAAGGCATTAGAGC
TTTGAATGCTGCTTCAAAAACCACAGAAGATAGAAGGACCCAATGTAATT
GTGTGAAGGAAGGCGCTGCTAGGATCCCTGGACTCGACTATGATCGTGTT
AATATGCTTCCTGACATTTGTCGGAGTAAATGTCCTTATAAACTTACACA
TGATCTTGATTGCTCTAAGTGCGCCCTTAATTCTTATCCTAGCTAGCCTG
TTATTGCTTGTTCTCTTATTCATTGTTTTGAATTTTAGGCCCTTTCCGAG
CCGATCATTTACCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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