CB610696

Overview
NameCB610696
Unique NameCB610696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length504
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.227e-44
Identity = 84/133 (63.16%), Postives = 104/133 (78.20%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFLSSALTYAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            RR+NVFDP SLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N KV+QVKA +ENGVLT+  PK
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPK 135          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.799e-44
Identity = 88/140 (62.86%), Postives = 103/140 (73.57%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGF-------LSSALTYAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            RR N FDP SLD+WDP DGF        SS+ +  P +  + + FA ARIDWKETP+ HVFKAD+PGL+          G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KA+MENGVLT+  PK
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPK 144          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.464e-44
Identity = 87/144 (60.42%), Postives = 110/144 (76.39%), Query Frame = 3
Query:   75 MSLIPSIFGGRRTN-VFDPVSLDVWDPFDGFLSSALTYAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            MSLIP IFG RR++ +FDP S+DV+DPF       L +  +++ E+S FAN RIDWKETP+ HVFK DLPGL+           R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+N K++QVKA+MENGVLT+  PK
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPF-----RELGFPSTNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK 139          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.105e-43
Identity = 84/133 (63.16%), Postives = 105/133 (78.95%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVWDPFDGFLSSALTYAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            RR+NVFDP + D WDPFDG   S +    +S R+T+ FANAR+DWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N KV+QVKA+MENGVLT+  PK
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVP--ATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPK 134          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.886e-43
Identity = 87/144 (60.42%), Postives = 105/144 (72.92%), Query Frame = 3
Query:   75 MSLIPSIFGG-RRTNVFDPVSLDVWDPFDGFLSSALTYAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            MS+IPS F   RR+N+FDP SLDVWDPF    SS+L+      RE S   NAR+DW+ETP+AHVFKADLPGL+            +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA MENGVLT+  PK
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS------RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPK 138          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.706e-41
Identity = 83/129 (64.34%), Postives = 99/129 (76.74%), Query Frame = 3
Query:  123 DPVSLDVWDPFDGF--LSSALTYAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            DP SLDVWDPF  F   +SAL+ A S  +E S F + RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+N K++QVKA MENGVLT+  PK
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALS-ASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPK 128          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.144e-40
Identity = 82/134 (61.19%), Postives = 103/134 (76.87%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVW-DPFDGFLSSALTYAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            RR+NVFDP + D+W DPFD F S     +  S+ ET+ FANAR+DWKETP+AHVFK DLPG++          G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++ KVE+VKA +ENGVLT+  PK
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS-ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPK 136          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.494e-40
Identity = 83/145 (57.24%), Postives = 102/145 (70.34%), Query Frame = 3
Query:   75 MSLIPSIFGGRR--TNVFDPVSLDVWDPFDGFLSSALTYAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            MSLIPS FG  R   ++FDP SLDVWDPF       L +  S + ETS   NAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKA+MENGVLT+  PK
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPF-----KELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVPK 140          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.415e-40
Identity = 82/134 (61.19%), Postives = 101/134 (75.37%), Query Frame = 3
Query:  105 RRTNVFDPVSLDVW-DPFDGFLSSALTYAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            RRTNVFDP + D+W DPFD F  S +        ET+ FANAR+DWKETP+AHVFKADLPG++          G +L +SGER+KE+E+KNDKWHRVERSSGKF+RRFRL ++ KVE+VKA +ENGVLT+  PK
Sbjct:    5 RRTNVFDPFA-DLWADPFDTF-RSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 136          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.265e-39
Identity = 85/146 (58.22%), Postives = 101/146 (69.18%), Query Frame = 3
Query:   75 MSLIPSIFGGRR---TNVFDPVSLDVWDPFDGFLSSALTYAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            MSLIPS FG  R    N+FDP SLDVWDPF       L +  SS+   S  ANAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKA+MENGVLT+  PK
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPF-----KELQFPSSSS---SAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTVPK 138          
The following BLAST results are available for this feature:
BLAST of CB610696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS16A_ORYSJ2.227e-4463.1616.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS177_ORYSJ3.799e-4462.8617.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLLC8.464e-4460.4217.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS16C_ORYSJ1.105e-4363.1616.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS17B_ARATH1.886e-4360.4217.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_MEDSA6.706e-4164.3418.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16A_WHEAT1.144e-4061.1916.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS178_ARATH1.494e-4057.2417.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16B_WHEAT7.415e-4061.1916.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS17A_ARATH1.265e-3958.2217.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_B11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610696 ID=CB610696; Name=CB610696; organism=Citrus sinensis; type=EST; length=504bp
GGGGATCTTCAAATTGATTGATCAAAGCATTTCCGAAGTTGTTGAGCATT
TAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCTACGCGCCGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAG
TAAAAGTTGAGGTTGTAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGG
AGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAG
CAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGGTAAGGTGG
AACAGGTTAAGGCCACCATGGAGAATGGTGTGCTCACAATCGCCGATCCT
AAAC
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