CB610696

Overview
NameCB610696
Unique NameCB610696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length504
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.318e-12
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  189 PSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDN  +E++ A   +GVL +  PK
Sbjct:   32 PSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPK 139          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.721e-12
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 3
Query:  201 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            R+    A    D KE   A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDN  V++V A   +GVLT+   K
Sbjct:   38 RDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEK 137          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.721e-12
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 3
Query:  234 DWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            D KE P A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDN  ++++ A   +GVLT+   K
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEK 144          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.721e-12
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  234 DWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTI 491
            D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+N   E++ A  ++GVLT+
Sbjct:   48 DVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTV 134          
BLAST of CB610696 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 34/102 (33.33%), Postives = 55/102 (53.92%), Query Frame = 3
Query:  201 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNGKVEQVKATMENGVLTIADPK 503
            R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+N  ++++ A   +GVL +   K
Sbjct:   37 RDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQK 138          
The following BLAST results are available for this feature:
BLAST of CB610696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS177_ARATH1.318e-1236.1117.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP23_MAIZE1.721e-1240.5917.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_MAIZE1.721e-1242.2217.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_IPONI1.721e-1242.5317.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HS176_ARATH3.246e-1133.3317.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_B11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610696 ID=CB610696; Name=CB610696; organism=Citrus sinensis; type=EST; length=504bp
GGGGATCTTCAAATTGATTGATCAAAGCATTTCCGAAGTTGTTGAGCATT
TAATTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCTACGCGCCGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAG
TAAAAGTTGAGGTTGTAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGG
AGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAG
CAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGGTAAGGTGG
AACAGGTTAAGGCCACCATGGAGAATGGTGTGCTCACAATCGCCGATCCT
AAAC
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