CB610733

Overview
NameCB610733
Unique NameCB610733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8_CHAGB (Autophagy-related protein 8 OS=Chaetomium globosum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.614e-40
Identity = 83/116 (71.55%), Postives = 90/116 (77.59%), Query Frame = 2
Query:  101 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 448
            +S FK EH               Y DRIPVI EK E+SDI  IDKKKYLVP+DLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY+TYSGENTFG+
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFGN 117          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8_CRYNE (Autophagy-related protein 8 OS=Cryptococcus neoformans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.108e-40
Identity = 82/117 (70.09%), Postives = 91/117 (77.78%), Query Frame = 2
Query:   95 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 445
            M +S FK EH               Y DRIPVI EKAE+SDIP IDKKKYLVPADLTVGQFVYVIRKRIKL+ EKAIFIFVD++LPPT A+MS+IY+E KDEDGFLYV Y+ ENTFG
Sbjct:    1 MVRSKFKDEHPFDKRKAEAERIRQKYQDRIPVICEKAEKSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLAPEKAIFIFVDDILPPTAALMSSIYDEHKDEDGFLYVLYASENTFG 117          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8_SCLS1 (Autophagy-related protein 8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atg8 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.596e-40
Identity = 82/119 (68.91%), Postives = 91/119 (76.47%), Query Frame = 2
Query:  101 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIQ 457
            +S FK EH               Y DRIPVI EK E+SDI  IDKKKYLVP+DLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY++YSGENTFG  ++
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYSDRIPVICEKVEKSDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFGEALE 120          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8_BOTFB (Autophagy-related protein 8 OS=Botryotinia fuckeliana (strain B05.10) GN=atg8 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.696e-40
Identity = 82/119 (68.91%), Postives = 91/119 (76.47%), Query Frame = 2
Query:  101 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIQ 457
            +S FK EH               Y DRIPVI EK E+SDI  IDKKKYLVP+DLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+MS+IYEE KDEDGFLY++YSGENTFG  ++
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYNDRIPVICEKVEKSDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFGEALE 120          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8_PICPA (Autophagy-related protein 8 OS=Pichia pastoris GN=ATG8 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.857e-39
Identity = 76/115 (66.09%), Postives = 88/115 (76.52%), Query Frame = 2
Query:  101 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 445
            +S FK EH               + DRIPVI EK E+SDIP +DK+KYLVP DLTVGQFVYVIRKRIK+ +EKAIFIF+D++LPPT A+MS +YEE KDEDGFLYV YSGENTFG
Sbjct:    2 RSQFKDEHPFEKRKAEAMRIRYKFADRIPVICEKVEKSDIPEVDKRKYLVPCDLTVGQFVYVIRKRIKIPSEKAIFIFIDDILPPTAALMSKVYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8_MAGGR (Autophagy-related protein 8 OS=Magnaporthe grisea GN=ATG8 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.857e-39
Identity = 81/115 (70.43%), Postives = 87/115 (75.65%), Query Frame = 2
Query:  101 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 445
            +S FK EH               Y DRIPVI EK E+SDI  IDKKKYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV + LPPT A+MS+IYE  KDEDGFLY+TYSGENTFG
Sbjct:    2 RSKFKDEHPFEKRKAEAERIRQKYTDRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVQDTLPPTAALMSSIYELHKDEDGFLYITYSGENTFG 116          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8_SCHPO (Autophagy-related protein 8 OS=Schizosaccharomyces pombe GN=atg8 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.157e-38
Identity = 78/116 (67.24%), Postives = 88/116 (75.86%), Query Frame = 2
Query:  101 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 448
            +S FK +                YPDRIPVI EK ++SDI  IDKKKYLVP+DLTVGQFVYVIRKRIKLS EKAIFIF+D +LPPT A+MS IYEE K EDGFLY+TYSGENTFG+
Sbjct:    2 RSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGT 117          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8_CANAL (Autophagy-related protein 8 OS=Candida albicans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.973e-38
Identity = 77/120 (64.17%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  101 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIQV 460
            +S FK EH               + DR+PVI EK E SDIP IDK+KYLVP DLTVGQFVYVIRKRIKL +EKAIFIFV+++LPPT A++S IYEE KDEDGFLYV YSGENTFG  + +
Sbjct:    2 RSQFKDEHPFEKRQAEAARIAQRFKDRVPVICEKVENSDIPEIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFGEKLAI 121          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8_YEAST (Autophagy-related protein 8 OS=Saccharomyces cerevisiae GN=ATG8 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.498e-38
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = 2
Query:  101 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 445
            KS FK E+               + +RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct:    2 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CB610733 vs. ExPASy Swiss-Prot
Match: ATG8_YEAS7 (Autophagy-related protein 8 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.498e-38
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = 2
Query:  101 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 445
            KS FK E+               + +RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct:    2 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CB610733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8_CHAGB1.614e-4071.55Autophagy-related protein 8 OS=Chaetomium globosum... [more]
ATG8_CRYNE2.108e-4070.09Autophagy-related protein 8 OS=Cryptococcus neofor... [more]
ATG8_SCLS13.596e-4068.91Autophagy-related protein 8 OS=Sclerotinia sclerot... [more]
ATG8_BOTFB4.696e-4068.91Autophagy-related protein 8 OS=Botryotinia fuckeli... [more]
ATG8_PICPA8.857e-3966.09Autophagy-related protein 8 OS=Pichia pastoris GN=... [more]
ATG8_MAGGR8.857e-3970.43Autophagy-related protein 8 OS=Magnaporthe grisea ... [more]
ATG8_SCHPO1.157e-3867.24Autophagy-related protein 8 OS=Schizosaccharomyces... [more]
ATG8_CANAL1.973e-3864.17Autophagy-related protein 8 OS=Candida albicans GN... [more]
ATG8_YEAST7.498e-3868.70Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_YEAS77.498e-3868.70Autophagy-related protein 8 OS=Saccharomyces cerev... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IaF_F12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IaF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610733 ID=CB610733; Name=CB610733; organism=Citrus sinensis; type=EST; length=673bp
GGGGCTTTTGAAGGATTTTGATCATTAAAGGATTCTCGCTCTTTGCTGTT
TTTTTTTCCTCTCGCTTCTTCGCTTCGACTCTTCACAAGGAGGAATGGCA
AAGAGTTACTTCAAGCAAGAGCATGATCTTGAGAAGAGACGCGCCGAGGC
TGCAAGGATTAGGGAGAAGTACCCTGACAGGATTCCGGTGATTGTGGAGA
AGGCAGAGAGAAGTGACATACCAAATATAGATAAGAAGAAGTATCTTGTT
CCAGCTGACCTGACTGTAGGACAATTTGTCTATGTCATCCGTAAAAGGAT
CAAACTGAGTGCTGAAAAGGCGATATTTATTTTTGTGGATAATGTGCTCC
CACCTACAGGTGCAATTATGTCTGCCATATACGAAGAGAAAAAGGATGAA
GATGGTTTTCTTTATGTGACTTACAGTGGGGAGAACACATTTGGAAGCCA
CATCCAAGTTTAGCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTT
GTGCGACCACATTTTTATCTCAATTATCATCCTTGCTTTCCGCTGAATAT
TCCTTTATCGGGCATATTTTATATTTTATAAAGACATTGCCAGTGATAAT
ATGTACAGTTACCTATTGTATATAAGTCTTAAAGGCATAATATGTCAAAT
TTCTTTCTTGCCTTTCTATTTTG
back to top