CB610851

Overview
NameCB610851
Unique NameCB610851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.219e-12
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 1
Query:  166 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITK 309
            +++L A+ +PP+GVFL++G   EFW+CLLLT+  +IPG+IYA+YV+TK
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: PMP3_GIBZE (Plasma membrane proteolipid 3 OS=Gibberella zeae GN=PMP3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.433e-12
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 1
Query:  172 ILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITK 309
            I+LA+ILPP+GVFL+ GC A+F+I +LLTILGYIPGII+A+Y+I K
Sbjct:   21 IILAIILPPVGVFLERGCGADFFINILLTILGYIPGIIHALYIILK 66          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  139 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYVI 303
            MA      C +IL+A++LPPLGV LK GC   EF ICL+LTILGYIPGIIYA+YVI
Sbjct:    1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: PMP3_CRYNE (Plasma membrane proteolipid 3 OS=Cryptococcus neoformans GN=PMP3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.438e-11
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1
Query:  160 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITK 309
            TC DI   +LA+ILPPLGVFL+ GC A+  I +LLTILGYIPGII+A+Y+I K
Sbjct:    4 TCSDIFKIILAIILPPLGVFLERGCGADLLINILLTILGYIPGIIHALYIILK 56          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: Y567_PSEAE (UPF0057 membrane protein PA0567 OS=Pseudomonas aeruginosa GN=PA0567 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.879e-11
Identity = 29/49 (59.18%), Postives = 41/49 (83.67%), Query Frame = 1
Query:  166 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITKK 312
            + IL+A++LPPLGVFL+ G    FW+ +LLT+LGYIPGI++AVY+I K+
Sbjct:    4 IRILIAILLPPLGVFLQVGFGGAFWLNILLTLLGYIPGIVHAVYIIAKR 52          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: YCU3_CAEEL (UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans GN=T23F2.3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.454e-11
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1
Query:  160 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVI 303
            TC DI   + AV+LPP+GVFL+ GC     IC+LLTILGYIPGIIYA YVI
Sbjct:    4 TCTDIPKFICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: YCU4_CAEEL (UPF0057 membrane protein T23F2.4 OS=Caenorhabditis elegans GN=T23F2.4 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.204e-11
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:  160 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVI 303
            TC+DI   L A++LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y+I
Sbjct:    4 TCMDIPKFLFALLLPPVGVFLEKGCTHHLAICILLTILGYIPGIIYACYII 54          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1
Query:  151 STATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYVI 303
            S   C +I +A++LPP+GV L+ GC   EF+ICL+LT LGY+PGIIYA+Y I
Sbjct:    4 SCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55          
The following BLAST results are available for this feature:
BLAST of CB610851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RC21_ARATH2.219e-1256.25UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]
PMP3_GIBZE8.433e-1269.57Plasma membrane proteolipid 3 OS=Gibberella zeae G... [more]
RC23_ARATH1.101e-1166.07UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
PMP3_CRYNE1.438e-1166.04Plasma membrane proteolipid 3 OS=Cryptococcus neof... [more]
Y567_PSEAE1.879e-1159.18UPF0057 membrane protein PA0567 OS=Pseudomonas aer... [more]
YCU3_CAEEL2.454e-1166.67UPF0057 membrane protein T23F2.3 OS=Caenorhabditis... [more]
YCU4_CAEEL3.204e-1164.71UPF0057 membrane protein T23F2.4 OS=Caenorhabditis... [more]
RC22_ARATH5.466e-1157.69UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIaF_H04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIaF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610851 ID=CB610851; Name=CB610851; organism=Citrus sinensis; type=EST; length=641bp
GCGGGGAAACAAAAATACCAATTAGATATAACAAAAGCAGTTACTCAAAA
CCCTAAGCACTTCTTTAATCAAAGTTCTTGTTTTTTGACTCTAAATTTTA
TTTTATTCCATTTTACACTTTTTAAGAATCAATCAAAGATGGCAGATGGA
AGCACAGCAACATGCGTAGATATTCTCTTGGCTGTTATCTTGCCTCCTCT
TGGTGTCTTTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGATCTGTTTGC
TCTTGACAATTCTGGGGTATATCCCTGGAATTATTTATGCTGTTTATGTC
ATCACCAAGAAGTGATCTCTCGTCTTCATCTATTGAGAGATCCCAAGGGC
ATCATGTGTTATGAGATCTTTTATTTACAACCGTTAGATGGGCAGCTCTG
ATTTGATGTAGCCAGATGGGTTCTGATTCATAATCAACTGGGGTGTGCGT
GTGTGTGTGGGAGAGAGCACTTGTTTCGTTTGTTAATCTTTATCGTTTTC
TTTTCTTTCATTTGTCCTTTTTAATGAATTTTAATTCAATATGTTGATGT
AAAGTGGAGTATTATTGAGTGTGTAAATTGCCTTGTGAATCATTACAAGT
CCCCACAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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