CB610962

Overview
NameCB610962
Unique NameCB610962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.419e-45
Identity = 108/266 (40.60%), Postives = 151/266 (56.77%), Query Frame = 1
Query:   79 VNLDEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANP-EGEVATARAAASCNT-----IMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATI 858
            +NL +F+ LA   L K  + +Y+ GA DE T +EN  A+HRI F+ +ILVDV ++D+ST +L   +  P  ++ TAL KL NP EGE   AR      T     I  L+                 ++YQLYV   R IT  LV+  E+ G KAL +T D P LG+RE D+K K         + +  T V    G++     ++ +D SL+WKD+E L+  T LPI+IKG+   ED IKA E+GV+G+++SNHG RQLD+S A I
Sbjct:  203 INLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKA-GPKAMKKTNVEESQGAS--RALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 465          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.184e-42
Identity = 114/271 (42.07%), Postives = 150/271 (55.35%), Query Frame = 1
Query:   85 LDEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRR----------EADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISA 864
            L +F+  A+  L K  +DF  G A+D  T  +N+ AF RI  R R L DVS+ID  TTI   +I+API I+PTA H +A  +GE +TA+AA   N   V+ S+                 ++QLYV    DI   +VQR E  GFKALV+T D P LG R          EA+IK K +  P ++  G L T +S  + S+              W DL  L+S+T LPI++KGILT+EDA  AV+  + GIIVSNHG RQLD  PA+I A
Sbjct:    6 LADFKAQAQKQLSKTSWDFIEGEADDGITYNDNLAAFRRIRLRPRYLRDVSKIDTRTTIQGQEINAPICISPTAFHSIAWADGEKSTAKAAQKANICYVISSYASYTVEDIVAAAPGGLHWFQLYVQPDWDINKQMVQRIEALGFKALVVTVDAPVLGNRRGNKRSLLDLEANIKLKDLRSPGESKSG-LPTPLSMPSSSS-------------CWNDLPLLQSMTRLPIILKGILTKEDAELAVKHNIRGIIVSNHGGRQLDEVPASIDA 262          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.693e-37
Identity = 100/282 (35.46%), Postives = 147/282 (52.13%), Query Frame = 1
Query:   64 MAAEPVNLDEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKN----LEGLLSTK----------------VSSDTGSNFEADA---NETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            M+    N++++++L +  LPKM YD+  GGAEDE+ +K N + F +  F+ + LVDVSR  L   +L  + S P++I PT L+    P+G++A ARAA       VLS                  ++QLYV   R+I   +V +A   G+  LVLT D    G RE D+ N+   P   +    L+G L  +                VSS T S+ E  A   +  MDAS +W+ L WLR +    +L+KG+L+ EDA + +  G  G+I+SNHG RQLD
Sbjct:    1 MSQNLFNVEDYRKLRQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPMSYSAKVVLDGCLHPRWSLDFVRHGMPQLANFVSSQT-SSLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLD 280          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_AGRVS (L-lactate dehydrogenase [cytochrome] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=lldD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.454e-34
Identity = 88/274 (32.12%), Postives = 130/274 (47.45%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTG---------------------SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++E AR  LP   + +  GGA  EHT++ N++    +  R R+L  V  +D+STT+ D +++ P+++AP  L  +    GEV  ARAA      + LS                  ++QLYV + R      ++RA   G + LV T D P  G R  D  + M  P     + ++ ++    + D G                     +++     E  D S+ WKDLEW+R     P++IKGIL  EDA  AV  G  GIIVSNHG RQLD
Sbjct:    8 DYREAARRRLPPFLFHYIDGGAYSEHTMRRNIDDLADLALRQRVLKSVGTVDISTTLFDEELAMPVVLAPVGLTGMYARRGEVQAARAAEKKGIPLTLSTVSVCPIEEVQAASNRPIWFQLYVLRDRGFMKNALERAWAAGIRKLVFTVDMPVPGARYRDAHSGMSGPNASLRRIIQAVMHPTWAIDVGLLGKPHDLGNVSAYRQQKTNLADYVGWLGENFDPSIGWKDLEWIRDFWKGPMIIKGILDPEDAKDAVRFGADGIIVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.695e-34
Identity = 94/274 (34.31%), Postives = 131/274 (47.81%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLE--------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P   P + L+                    G +ST   + TG  ++        D S+SWKDLEW+R   N P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRDAHSGMSGPYAAPRRILQAMTHPAWAWDVGLLGKPHDLGNISTYRGNPTGLEDYIGWLGANFDPSISWKDLEWIREFWNGPMVIKGILDPEDAKDAVKFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_CHRSD (L-lactate dehydrogenase [cytochrome] OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lldD PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.313e-33
Identity = 96/282 (34.04%), Postives = 131/282 (46.45%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKM-------------ITPPLKNLE-GLLSTKVSSDTGSNFEADANE----------TMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISA 864
            +++  A+  LP   + +  GGA  EHTL+ NVE    I  R R+L D+S + L T +    ++ P+ +AP  L  +    GEV  ARAAAS      LS                  ++QLYV + R     +++RA+  G K LV T D P  G R  D  + M             +T P    + GL          S++     E            D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD  P+T  A
Sbjct:    8 DYRHAAKRRLPPFLFHYADGGAYAEHTLRRNVEDLAGIALRQRVLKDMSHLSLETELFGEPLAMPVALAPVGLAGMYARRGEVQAARAAASKGIPFTLSTVSVCPIAEVASAIERPLWFQLYVLRDRGFMKHVLERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGKHGGLRRMLQAVTHPSWAWDVGLHGRPHDLGNVSDYRGQPTELEDYIAWLGNNFDPSISWKDLEWIREFWDGPMIIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVPSTARA 289          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEE4 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas entomophila (strain L48) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.819e-33
Identity = 92/274 (33.58%), Postives = 131/274 (47.81%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP--PLKNLE---------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + L T + D  +S P+ +AP  L  +    GEV  ARAAA+      +S                  ++QLYV K R      ++RA+  G K LV T D P  G R  D  + M  P  PL+ +                      G +S    + TG +++        D S+SWKDLEW+R   + P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLASIALRQRVLKNMSDLSLETRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAPLRRVWQAMTHPQWALDVGLLGRPHDLGNISKYRGNPTGLADYIGWLGNNFDPSISWKDLEWIREFWDGPMIIKGILDADDARDAVKFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEMY (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas mendocina (strain ymp) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.988e-33
Identity = 95/274 (34.67%), Postives = 130/274 (47.45%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP--PLKNLE---------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S +DLST +   K+S P+ +AP  L  +    GEV  A+AAA+      LS                  ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P  PL+ +                      G +S    + TG +++        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GIIVSNHG RQLD
Sbjct:    8 DYRAAAERKLPPFLFHYADGGAYAEHTLRRNVADLSNIELRQRVLKNMSELDLSTELFGEKMSMPVGLAPVGLTGMYARRGEVQAAKAAAAKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNGPLRRVLQAMTHPQWAWDVGVMGKPHDLGNISAYRGNPTGLADYIGWLGANFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVTFGADGIIVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPG (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain GB-1) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.514e-33
Identity = 91/274 (33.21%), Postives = 131/274 (47.81%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMI--TPPLKN-LEGLLSTKVSSDTG---------------------SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + LST + D  +S P+ +AP  L  +    GEV  ARAAA+      +S                  ++QLYV K R      ++RA+  G K LV T D P  G R  D  + M     PL+  L+ +   + + D G                     +++        D S+SWKDLEW+R   + P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLASIALRQRVLNNMSELSLSTRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGKNGPLRRVLQAMTHPEWAWDVGVMGRPHDLGNISKYRGNPTGLADYIGWLGNNFDPSISWKDLEWIREYWDGPMIIKGILDADDARDAVKFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.514e-33
Identity = 94/274 (34.31%), Postives = 130/274 (47.45%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTG--------SNFEA-DANET------------MDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P   P + L+ +     + D G         N  A   N T             D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRDAHSGMSGPYAAPRRILQAMTHPAWAWDVGLLGKPHDLGNISAYRGNPTGLEDYIGWLGANFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLD 281          
The following BLAST results are available for this feature:
BLAST of CB610962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
CYB2_YEAST7.419e-4540.60Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
HAOX2_MOUSE1.184e-4242.07Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
MDLB_PSEPU5.693e-3735.46(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]
LLDD_AGRVS3.454e-3432.12L-lactate dehydrogenase [cytochrome] OS=Agrobacter... [more]
LLDD_PSEA77.695e-3434.31L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_CHRSD1.313e-3334.04L-lactate dehydrogenase [cytochrome] OS=Chromohalo... [more]
LLDD_PSEE43.819e-3333.58L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEMY4.988e-3334.67L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEPG6.514e-3333.21L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAE6.514e-3334.31L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_A09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610962 ID=CB610962; Name=CB610962; organism=Citrus sinensis; type=EST; length=865bp
GGGGATTTCTTTACAAAATTCTATTGTTTAAGTTTGATTAATAGTTATTC
GAATCGGTTCCAAATGGCAGCTGAACCTGTTAATTTGGATGAGTTCCAAG
AATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTGGT
GGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCATAG
AATTACGTTTCGGTCAAGAATTCTTGTCGATGTCAGCAGAATTGATTTAT
CGACTACCATACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTCCA
ACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGGTAGCCACAGCCAG
AGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACATCTAGCA
GCTCCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTTCTATCAA
TTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCAGAGAGC
TGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAGAC
TTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATTACACCGCCGTTG
AAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCTCTGATACAGGTTC
GAATTTTGAAGCTGATGCCAACGAGACCATGGATGCTTCTTTAAGTTGGA
AGGATTTAGAATGGCTAAGATCTATTACAAACTTACCAATTTTGATCAAG
GGGATACTTACTCGTGAAGATGCAATAAAAGCTGTGGAAGTAGGTGTTGC
TGGGATTATTGTCTCCAATCACGGAGCTCGACAGTTAGATTATAGTCCTG
CCACTATTTCTGCTC
back to top