CB610962

Overview
NameCB610962
Unique NameCB610962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.514e-33
Identity = 94/274 (34.31%), Postives = 130/274 (47.45%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTG--------SNFEA-DANET------------MDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P   P + L+ +     + D G         N  A   N T             D S+SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRDAHSGMSGPYAAPRRILQAMTHPAWAWDVGLLGKPHDLGNISAYRGNPTGLEDYIGWLGANFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.111e-32
Identity = 94/274 (34.31%), Postives = 127/274 (46.35%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP--PLKNLE---------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S + LST +    ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P  PL+ +                      G +ST   S TG  ++        D S+SWKDLEW+R     P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAEARLPPFLFHYMDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNAPLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.451e-32
Identity = 95/274 (34.67%), Postives = 126/274 (45.99%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTG--------SNFEADANE-------------TMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++E AR  LP   + +  GGA  E TL+ NVE    +  R R+L  V  +DLSTT+L  ++S P+ +AP  L  +    GEV  A+AA        LS                  ++QLYV K R      ++RA   G + LV T D P  G R  D  + M  P     + ++ +L    + D G         N  A   E               D S+ WKDLEW+R     P++IKGIL  EDA  AV  G  GIIVSNHG RQLD
Sbjct:    8 DYREAARRRLPPFLFHYIDGGAYAEATLRRNVEDLSDLALRQRVLKSVGEVDLSTTLLKQQLSMPVGLAPVGLTGMYARRGEVQAAQAATQKGIPFTLSTVSVCSIEEVQSQVGKPIWFQLYVLKDRGFMKNALERAWAAGIRTLVFTVDMPVPGARYRDAHSGMSGPNAAFRRMVQAVLHPFWAYDVGLMGTPHDLGNVSAYRKEKTSLEDYVGWLGNNFDPSIGWKDLEWIREFWKGPMVIKGILDPEDARDAVRFGADGIIVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPW (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain W619) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.451e-32
Identity = 89/274 (32.48%), Postives = 129/274 (47.08%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMI---TPPLKNLEGLLSTKVSSDTG---------------------SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + L T + D  +S P+ +AP  L  +    GEV  ARAAA+      +S                  ++QLYV K R      ++RA+  G K LV T D P  G R  D  + M     P  + L+ +   + + D G                     +++        D S+SWKDLEW+R   + P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLAGIALRQRVLKNMSELSLETRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGANGPMRRVLQAMTHPEWAWDVGVMGRPHDLGNISKYRGNPTGLADYIGWLGSNFDPSISWKDLEWIREFWDGPMIIKGILDADDARDAVKFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.451e-32
Identity = 93/274 (33.94%), Postives = 130/274 (47.45%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTG--------SNFEA-DANET------------MDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P   P + L+ +     + D G         N  A   N T             D S++WKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRDAHSGMSGPYAAPRRILQAMTHPAWAWDVGLLGKPHDLGNISAYRGNPTGLEDYIGWLGANFDPSIAWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPK (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain KT2440) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.895e-32
Identity = 90/274 (32.85%), Postives = 130/274 (47.45%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMI--TPPLKN-LEGLLSTKVSSDTG---------------------SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + L T + D  +S P+ +AP  L  +    GEV  ARAAA+      +S                  ++QLYV K R      ++RA+  G K LV T D P  G R  D  + M     PL+  L+ +   + + D G                     +++        D S+SWKDLEW+R   + P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLAGIALRQRVLNNMSELSLETKLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAINRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGKNGPLRRVLQAMTHPEWAWDVGVMGRPHDLGNISKYRGNPTGLADYIGWLGNNFDPSISWKDLEWIREFWDGPMIIKGILDADDARDAVKFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEP1 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.895e-32
Identity = 90/274 (32.85%), Postives = 130/274 (47.45%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMI--TPPLKN-LEGLLSTKVSSDTG---------------------SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + L T + D  +S P+ +AP  L  +    GEV  ARAAA+      +S                  ++QLYV K R      ++RA+  G K LV T D P  G R  D  + M     PL+  L+ +   + + D G                     +++        D S+SWKDLEW+R   + P++IKGIL  +DA  AV+ G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLAGIALRQRVLNNMSELSLETKLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAINRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGKNGPLRRVLQAMTHPEWAWDVGVMGRPHDLGNISKYRGNPTGLADYIGWLGNNFDPSISWKDLEWIREFWDGPMIIKGILDADDARDAVKFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_CAUSK (L-lactate dehydrogenase [cytochrome] OS=Caulobacter sp. (strain K31) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.895e-32
Identity = 91/274 (33.21%), Postives = 129/274 (47.08%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP--PLKNLE---------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +F+E AR  LP+  +D+  GGA  E TL  NV     I+ R R+L DVSR+   TT+   + + P+ +AP  L  +    GEV  ARAAA+      LS                  ++QLY+ + R     L+ RA   G  ALV T D P  G R  D  + M  P   ++ L                      G ++  +  +TG  +F        D S+ WKDL+W+R     P+++KG+L  EDA  A ++G  GI+VSNHG RQLD
Sbjct:    8 DFREAARRQLPRFLFDYIDGGAYAERTLARNVSDLADISLRQRVLKDVSRVSTRTTLFGVEQTLPVALAPVGLTGMYARRGEVQAARAAAAKGVPFCLSTVSVCDLAEVSRASSAPIWFQLYMLRDRGFMRDLLARAADAGATALVFTVDMPVPGARYRDAHSGMTGPNAAMRRLVQAVFKPGWAWDVGVMGRPHTLGNVAPVLGENTGLEDFMGWLGANFDPSIQWKDLDWIRDQWKGPLILKGVLDPEDAKAAADIGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
The following BLAST results are available for this feature:
BLAST of CB610962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_PSEA86.514e-3334.31L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_XANCB1.111e-3234.31L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANP21.451e-3234.67L-lactate dehydrogenase [cytochrome] OS=Xanthobact... [more]
LLDD_PSEPW1.451e-3232.48L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAB1.451e-3233.94L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEPK1.895e-3232.85L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEP11.895e-3232.85L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_CAUSK1.895e-3233.21L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_SHISS2.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL2.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_A09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610962 ID=CB610962; Name=CB610962; organism=Citrus sinensis; type=EST; length=865bp
GGGGATTTCTTTACAAAATTCTATTGTTTAAGTTTGATTAATAGTTATTC
GAATCGGTTCCAAATGGCAGCTGAACCTGTTAATTTGGATGAGTTCCAAG
AATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTGGT
GGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCATAG
AATTACGTTTCGGTCAAGAATTCTTGTCGATGTCAGCAGAATTGATTTAT
CGACTACCATACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTCCA
ACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGGTAGCCACAGCCAG
AGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACATCTAGCA
GCTCCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTTCTATCAA
TTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCAGAGAGC
TGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAGAC
TTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATTACACCGCCGTTG
AAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCTCTGATACAGGTTC
GAATTTTGAAGCTGATGCCAACGAGACCATGGATGCTTCTTTAAGTTGGA
AGGATTTAGAATGGCTAAGATCTATTACAAACTTACCAATTTTGATCAAG
GGGATACTTACTCGTGAAGATGCAATAAAAGCTGTGGAAGTAGGTGTTGC
TGGGATTATTGTCTCCAATCACGGAGCTCGACAGTTAGATTATAGTCCTG
CCACTATTTCTGCTC
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