CB610962

Overview
NameCB610962
Unique NameCB610962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADTHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_SHIB3 (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_PSEFS (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas fluorescens (strain SBW25) GN=lldD PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/282 (31.56%), Postives = 130/282 (46.10%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTG---------------------SNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISA 864
            +++  A+  LP+  +D+  GGA  EHT++ N      I+ R RIL +V  + L TT+   ++  P+I++P  L  +    GEV  A+AAA+      LS                  ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G                      ++        D S+SWKDLEW+R     P++IKGIL  +DA  AV  G  GI+VSNHG RQLD   +T  A
Sbjct:    8 DYRAAAQRKLPRFLFDYIDGGAYAEHTMRANSSDLAEISLRQRILRNVDNLSLKTTVFGQELDMPVILSPVGLTGMYARRGEVQAAKAAANKGVPFCLSTVSVCPIEEVASQSARAIWFQLYVLKDRGFMRNALERAQAAGVTTLVFTVDMPTPGARYRDAHSGMSGPFAAQRRMLQAMTKPQWAFDVGLMGRPHDLGNISKYLGKPTHLEDYIGWLANNFDPSISWKDLEWIREFWKGPMIIKGILDPQDAKDAVSFGADGIVVSNHGGRQLDGVLSTAKA 289          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSM (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSE (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SE11) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLU (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLI (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12) GN=lldD PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CB610962 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLC (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lldD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 89/274 (32.48%), Postives = 128/274 (46.72%), Query Frame = 1
Query:   91 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLD 840
            +++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP  L  +    GEV  A+AA +      LS                  ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD
Sbjct:    8 DYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
The following BLAST results are available for this feature:
BLAST of CB610962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SHIF82.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS2.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS2.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_SHIB32.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_PSEFS2.475e-3231.56L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ECOSM2.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOSE2.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLU2.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLI2.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLC2.475e-3232.48L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_A09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610962 ID=CB610962; Name=CB610962; organism=Citrus sinensis; type=EST; length=865bp
GGGGATTTCTTTACAAAATTCTATTGTTTAAGTTTGATTAATAGTTATTC
GAATCGGTTCCAAATGGCAGCTGAACCTGTTAATTTGGATGAGTTCCAAG
AATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTGGT
GGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCATAG
AATTACGTTTCGGTCAAGAATTCTTGTCGATGTCAGCAGAATTGATTTAT
CGACTACCATACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTCCA
ACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGGTAGCCACAGCCAG
AGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACATCTAGCA
GCTCCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTTCTATCAA
TTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCAGAGAGC
TGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAGAC
TTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATTACACCGCCGTTG
AAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCTCTGATACAGGTTC
GAATTTTGAAGCTGATGCCAACGAGACCATGGATGCTTCTTTAAGTTGGA
AGGATTTAGAATGGCTAAGATCTATTACAAACTTACCAATTTTGATCAAG
GGGATACTTACTCGTGAAGATGCAATAAAAGCTGTGGAAGTAGGTGTTGC
TGGGATTATTGTCTCCAATCACGGAGCTCGACAGTTAGATTATAGTCCTG
CCACTATTTCTGCTC
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