CB610969

Overview
NameCB610969
Unique NameCB610969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_CANTR (60S ribosomal protein L44 OS=Candida tropicalis GN=RPL44 PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.394e-39
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSL 380
            MVN+PKT+ TY K K CRKHT+HKVTQYK G+ SL AQGKRRYDRKQSGYGGQTK VFHKKAKTTKKIVL+L+C  CK   Q P+KRCKH E+GG+KK K  +L
Sbjct:    1 MVNIPKTRNTYCKGKGCRKHTIHKVTQYKAGRASLFAQGKRRYDRKQSGYGGQTKQVFHKKAKTTKKIVLKLECTVCKTKKQLPLKRCKHIELGGEKKQKGQAL 104          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_CAEEL (60S ribosomal protein L44 OS=Caenorhabditis elegans GN=rpl-41 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.485e-38
Identity = 73/100 (73.00%), Postives = 84/100 (84.00%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK 368
            MVNVPK ++T+   K CRKHT HKVTQYKKGK+S  AQG+RRYDRKQSG+GGQTKP+F KKAKTTKKIVLR++C  CKH  Q PIKRCKHFE+GG KK +
Sbjct:    1 MVNVPKARRTFCDGK-CRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSR 99          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_CHLRE (60S ribosomal protein L44 OS=Chlamydomonas reinhardtii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.704e-37
Identity = 75/98 (76.53%), Postives = 81/98 (82.65%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 362
            MVNVPKTK+ + K   C+KH + KVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLR+QCQ CK      +KRCKHFEIGGDKK
Sbjct:    1 MVNVPKTKRAFCKG--CKKHMMMKVTQYKTGKASLYAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRMQCQECKQTCMKGLKRCKHFEIGGDKK 96          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_BRUMA (60S ribosomal protein L44 OS=Brugia malayi GN=rpl-44 PE=3 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.704e-37
Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKK 362
            MVNVPKT++T+   K CR+HT+HKVTQYKKGK+S  AQG+RRYD KQ G+GGQTKP+F KKAKTTKKIVLR++C  CKH  Q PIKRCKHFE+GG KK
Sbjct:    1 MVNVPKTRRTFCDGK-CRRHTMHKVTQYKKGKESRLAQGRRRYDSKQKGFGGQTKPIFRKKAKTTKKIVLRMECTECKHRKQLPIKRCKHFELGGQKK 97          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL36A_TAKRU (60S ribosomal protein L36a OS=Takifugu rubripes GN=rpl36a PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.797e-37
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGK 368
            MVNVPKT++TY   K+C+KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK K
Sbjct:    1 MVNVPKTRRTY--CKKCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK 100          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL36A_ICTPU (60S ribosomal protein L36a OS=Ictalurus punctatus GN=rpl36a PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.797e-37
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGK 368
            MVNVPKT++TY   K+C+KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK K
Sbjct:    1 MVNVPKTRRTY--CKKCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK 100          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL36A_DANRE (60S ribosomal protein L36a OS=Danio rerio GN=rpl36a PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.797e-37
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGK 368
            MVNVPKT++TY   K+C+KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK K
Sbjct:    1 MVNVPKTRRTY--CKKCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK 100          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL36A_RAT (60S ribosomal protein L36a OS=Rattus norvegicus GN=Rpl36a PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.214e-36
Identity = 75/102 (73.53%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGK 368
            MVNVPKT++T+   K+C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK K
Sbjct:    1 MVNVPKTRRTF--CKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK 100          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL36A_PIG (60S ribosomal protein L36a OS=Sus scrofa GN=RPL36A PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.214e-36
Identity = 75/102 (73.53%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGK 368
            MVNVPKT++T+   K+C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK K
Sbjct:    1 MVNVPKTRRTF--CKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK 100          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL36A_MOUSE (60S ribosomal protein L36a OS=Mus musculus GN=Rpl36a PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.214e-36
Identity = 75/102 (73.53%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQC--QGCKHVSQHPIKRCKHFEIGGDKKGK 368
            MVNVPKT++T+   K+C KH  HKVTQYKKGKDSL AQGKRRYDRKQSGYGGQTKP+F KKAKTTKKIVLRL+C    C+      IKRCKHFE+GGDKK K
Sbjct:    1 MVNVPKTRRTF--CKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK 100          
The following BLAST results are available for this feature:
BLAST of CB610969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_CANTR1.394e-3973.0860S ribosomal protein L44 OS=Candida tropicalis GN... [more]
RL44_CAEEL4.485e-3873.0060S ribosomal protein L44 OS=Caenorhabditis elegan... [more]
RL44_CHLRE1.704e-3776.5360S ribosomal protein L44 OS=Chlamydomonas reinhar... [more]
RL44_BRUMA1.704e-3772.4560S ribosomal protein L44 OS=Brugia malayi GN=rpl-... [more]
RL36A_TAKRU3.797e-3774.5160S ribosomal protein L36a OS=Takifugu rubripes GN... [more]
RL36A_ICTPU3.797e-3774.5160S ribosomal protein L36a OS=Ictalurus punctatus ... [more]
RL36A_DANRE3.797e-3774.5160S ribosomal protein L36a OS=Danio rerio GN=rpl36... [more]
RL36A_RAT3.214e-3673.5360S ribosomal protein L36a OS=Rattus norvegicus GN... [more]
RL36A_PIG3.214e-3673.5360S ribosomal protein L36a OS=Sus scrofa GN=RPL36A... [more]
RL36A_MOUSE3.214e-3673.5360S ribosomal protein L36a OS=Mus musculus GN=Rpl3... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_H01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610969 ID=CB610969; Name=CB610969; organism=Citrus sinensis; type=EST; length=595bp
GGGGGTTACCCTTCGGCAGCAGTTGGAAGTTACGAAGAGCTCTCTCGTCG
TCGCCGCAGCCGGCCATCATGGTGAATGTTCCCAAGACTAAGAAGACTTA
CCGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTGACACAGT
ACAAGAAGGGCAAGGACAGTCTTGCTGCTCAAGGGAAGAGACGGTATGAT
CGCAAGCAGTCTGGCTATGGCGGTCAGACCAAGCCTGTCTTCCACAAGAA
GGCTAAGACCACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCA
AGCATGTGTCTCAACATCCCATCAAGAGGTGCAAGCACTTTGAAATTGGT
GGAGACAAGAAGGGAAAGGAAACATCTCTTTTCTAAATGCCTTTATTTTT
GTTTTTATGCTTTTTACTTTGCTGCACTTGATGGAACATTGCCCAGTATG
AGAATATTTGTTTTAGTTTTGTTGGGTTAGTTTGATGCTGTTAATTTAAA
ACTTGAAGCGGTTGTTTGTTAAGTGCTTATTATATCAGTTAATTTTATAT
TTGGATTTTTTTTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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