CB610979

Overview
NameCB610979
Unique NameCB610979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610979 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.371e-18
Identity = 55/167 (32.93%), Postives = 84/167 (50.30%), Query Frame = 1
Query:    4 VFEKF-IDDEGIFKSSLINDVQGMLSLYEAAYMTVRGEHILDEAIAFTTTHLKSLVAQ--DHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAF 495
            VF+ F I+    F ++L  D +GML LYEA+++   GE  L+ A  F+T  L+    +  D +   L+  I H+L  PL   +  LEAR+F+       D   N  +   AKL+FNI            ++WW       KLP+ RDR+VE +FW +  +   QY++
Sbjct:  163 VFDCFKIEKCSDFNANLAQDTKGMLQLYEASFLLREGEDTLELARRFSTRSLREKFDEGGDEIDEDLSSWIRHSLDLPLHWRVQGLEARWFLDAYARRPD--MNPLIFKLAKLNFNIVQATYQEELKDISRWWNSSCLAEKLPFVRDRIVECFFWAIAAFEPHQYSY 327          
BLAST of CB610979 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.989e-18
Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 1
Query:    4 VFEKFIDDEGI-FKSSLINDVQGMLSLYEAAYMTVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAF 495
            VF+ F +D+G  FK SL++D +G+L LYEA++++ +GE  L  A  F T  L   V  D     L   I  AL  P    +    AR F+       D   N T+L  AKLDFN+            ++WW       +LP+ RDR+VE Y+W  G     ++ +
Sbjct:  168 VFDCFKNDKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLHLARDFATKFLHKRVLVDKDI-NLLSSIERALELPTHWRVQMPNARSFIDAYKRRPD--MNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERREHGY 329          
BLAST of CB610979 vs. ExPASy Swiss-Prot
Match: TPS02_ARATH (Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.210e-18
Identity = 52/169 (30.77%), Postives = 85/169 (50.30%), Query Frame = 1
Query:    7 FEKFIDDEGIFKSSLINDVQGMLSLYEAAYMTVRGEHILDEAIAFTTTHLKSLVAQDHVT------PKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAF 495
            F+ FI + G F+ +L +D++G+LSLYEA+Y ++  E  L E   +    L   VA+   T        + E +  AL  P   ++ RLEAR+++++      H  N  LL FA +DFN+             K         +L + RDR+ E YFW +G ++EP++ +
Sbjct:  172 FDVFISETGEFRKTLHSDIKGLLSLYEASYFSMDSEFKLKETRIYANKRLSEFVAESSKTICREDETYILEMVKRALETPYHWSIRRLEARWYINVYE--KKHEMNPLLLEFAAIDFNM----LQANHQEELKLISSTGLMKQLDFVRDRITESYFWTIGIFYEPEFKY 334          
BLAST of CB610979 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.377e-17
Identity = 53/169 (31.36%), Postives = 87/169 (51.48%), Query Frame = 1
Query:    4 VFEKFID--DEGIFKSSLINDVQGMLSLYEAAYMTVRGEHILDEAIA-FTTTHLKSLVAQDHVTPK--LAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAF 495
            +F+  ID  +   FKS   +++  +++LYEA+Y++ + +  L + I  F T  +++ V  +  T    L E   HAL  P    + RLE R+++       D   N  L  FAK+DFNI            + WWK+    ++L + RDR+VE YFW +G  +EPQ+ +
Sbjct:  165 IFDVIIDKIESNTFKS---DNITSIITLYEASYLSTKSDTKLHKVIRPFATEQIRNFVDDESETYNIMLREMAIHALEIPYHWRMRRLETRWYIDAYEKKHD--MNLFLAEFAKIDFNIVQTAHQEDVKYVSCWWKETGLGSQLHFVRDRIVENYFWTVGMIYEPQFGY 328          
BLAST of CB610979 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.734e-16
Identity = 52/169 (30.77%), Postives = 87/169 (51.48%), Query Frame = 1
Query:    4 VFEKFIDDEGIFKSSLINDVQGMLSLYEAAYMTVRGEHILDEAIA-FTTTHLKSLVA----QDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAF 495
            VF+ F+++ G F     +D+ G++SLYEA+Y++ + +  L   I  F T  L+  V     +D  +  + E +  AL  P    + RL  R+++ +     ++  N  ++ FAK+DFNI            + WW +     +L +ARDR+VE YFW +G   EPQY +
Sbjct:  159 VFDVFMENCGKFDR---DDIYGLISLYEASYLSTKLDKNLQIFIRPFATQQLRDFVDTHSNEDFGSCDMVEIVVQALDMPYYWQMRRLSTRWYIDVYGKRQNYK-NLVVVEFAKIDFNIVQAIHQEELKNVSSWWMETGLGKQLYFARDRIVENYFWTIGQIQEPQYGY 323          
BLAST of CB610979 vs. ExPASy Swiss-Prot
Match: TPSD4_ABIGR (Delta-selinene synthase OS=Abies grandis GN=ag4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.877e-16
Identity = 56/178 (31.46%), Postives = 88/178 (49.44%), Query Frame = 1
Query:    1 GVFEKFIDDEGIFKSSLIND-------VQGMLSLYEAAYMTVRGEHILDEAIAFTTTHLKSLVAQD----HVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL---YNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYA 492
            GV + F D+ G F  +   +       V+ MLSL  A+ ++  GE +++EA AFT  +L  ++A       V   L  ++ +AL  P   ++PR EAR F+ +       L    N+ +L  AKLDFNI            T+WW+D    ++L + R R VE Y W +   FEP+++
Sbjct:  138 GVLKNFKDENGKFFCNFTGEEGRGDKQVRSMLSLLRASEISFPGEKVMEEAKAFTREYLNQVLAGHGDVTDVDQSLLREVKYALEFPWHCSVPRWEARSFLEIYGHNHSWLKSNINQKMLKLAKLDFNILQCKHHKEIQFITRWWRDSGI-SQLNFYRKRHVEYYSWVVMCIFEPEFS 314          
BLAST of CB610979 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.420e-15
Identity = 54/182 (29.67%), Postives = 87/182 (47.80%), Query Frame = 1
Query:    4 VFEKFIDDEG---IFKSSLINDVQGMLSLYEAAYMTVRGEHILDEAIAFTTTHLKSLVAQDHVTPK------LAEQINHALYRPLRKTLPRLEARYFMSMINSTSD----------HLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYA 492
            V E F D++G    F       V   L+LY  + +   GE I++EA  FTT HL++ +A+++   K      L  ++ +A+  P  +++PRLEAR ++    S             ++ N+  L  AKLDFN+              WW++  F   L + R R VE+YF    + FEP++A
Sbjct:  427 VLENFRDEKGDFFCFAGQTQIGVTDNLNLYRCSQVCFPGEKIMEEAKTFTTNHLQNALAKNNAFDKWAVKKDLPGEVEYAIKYPWHRSMPRLEARSYIEQFGSNDVWLGKTVYKMLYVSNEKYLELAKLDFNMVQALHQKETQHIVSWWRESGF-NDLTFTRQRPVEMYFSVAVSMFEPEFA 607          
BLAST of CB610979 vs. ExPASy Swiss-Prot
Match: TPSD5_ABIGR (Gamma-humulene synthase OS=Abies grandis GN=ag5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 58/180 (32.22%), Postives = 86/180 (47.78%), Query Frame = 1
Query:    1 GVFEKFIDDEG-IFKSSLIND---------VQGMLSLYEAAYMTVRGEHILDEAIAFTTTHLKSLVA---QDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL---YNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYA 492
            GV E F DD G  F  S + +         V+ MLSL  A+ +   GE +++EA AFTT +LK ++A     HV   L  ++ +AL  P   ++ R EAR F+ +       L    +K +L  AKLDFNI            ++W+ D    + L + R   VE YFW      EP+++
Sbjct:  148 GVLENFRDDNGQFFCGSTVEEEGAEAYNKHVRCMLSLSRASNILFPGEKVMEEAKAFTTNYLKKVLAGREATHVDESLLGEVKYALEFPWHCSVQRWEARSFIEIFGQIDSELKSNLSKKMLELAKLDFNILQCTHQKELQIISRWFADSSIAS-LNFYRKCYVEFYFWMAAAISEPEFS 326          
BLAST of CB610979 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.049e-14
Identity = 54/171 (31.58%), Postives = 86/171 (50.29%), Query Frame = 1
Query:    4 VFEKFIDDEGIFKSS----LINDVQGMLSLYEAAYMTVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMI----NSTSDHLYNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYA 492
            VF+ F    G F  S       +++G+L+L+ A+ +   GE I+DEA  F+T +LK  + +  V+  L+ +I   L       LPRLEAR ++ +      +T  ++ +K LL  AKL+FNI             +WWK+  F  ++ + R R VE Y       FEPQ++
Sbjct:  194 VFKAFKGQNGQFSCSENIQTDEEIRGVLNLFRASLIAFPGEKIMDEAEIFSTKYLKEALQKIPVS-SLSREIGDVLEYGWHTYLPRLEARNYIQVFGQDTENTKSYVKSKKLLELAKLEFNIFQSLQKRELESLVRWWKESGF-PEMTFCRHRHVEYYTLASCIAFEPQHS 362          
BLAST of CB610979 vs. ExPASy Swiss-Prot
Match: TPSD6_ABIGR (Camphene synthase, chloroplastic OS=Abies grandis GN=ag6 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 53/171 (30.99%), Postives = 84/171 (49.12%), Query Frame = 1
Query:    4 VFEKFIDDEGIFKSS----LINDVQGMLSLYEAAYMTVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLYNKT----LLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYA 492
            V   F D  G F S+    +  +++G+L+L+ A+ +   GE ++DEA  F+T +L+  + +   +  L+ +I   L       LPRLEAR +M +      H  NK     LL  AKL+FNI            ++WWKD   + ++ + R R VE Y       FEPQ++
Sbjct:  186 VLNVFKDKNGQFSSTANIQIEGEIRGVLNLFRASLVAFPGEKVMDEAETFSTKYLREALQKIPASSILSLEIRDVLEYGWHTNLPRLEARNYMDVF---GQHTKNKNAAEKLLELAKLEFNIFHSLQERELKHVSRWWKD-SGSPEMTFCRHRHVEYYALASCIAFEPQHS 352          
The following BLAST results are available for this feature:
BLAST of CB610979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
SSS_SALOF1.371e-1832.93(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
SCS_SALOF3.989e-1833.331,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
TPS02_ARATH5.210e-1830.77Probable terpenoid synthase 2, chloroplastic OS=Ar... [more]
MYRS2_ARATH3.377e-1731.36Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
MYRS1_ARATH3.734e-1630.77Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
TPSD4_ABIGR4.877e-1631.46Delta-selinene synthase OS=Abies grandis GN=ag4 PE... [more]
TPSD1_GINBI2.420e-1529.67Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
TPSD5_ABIGR3.161e-1532.22Gamma-humulene synthase OS=Abies grandis GN=ag5 PE... [more]
TPSD3_ABIGR2.049e-1431.58Pinene synthase, chloroplastic OS=Abies grandis GN... [more]
TPSD6_ABIGR4.564e-1430.99Camphene synthase, chloroplastic OS=Abies grandis ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_F04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610979 ID=CB610979; Name=CB610979; organism=Citrus sinensis; type=EST; length=527bp
GGGGTGTTTGAGAAGTTCATAGATGATGAGGGGATATTCAAGTCATCGTT
GATCAACGATGTTCAAGGGATGTTAAGTTTGTACGAGGCAGCATACATGA
CAGTTCGCGGAGAACATATATTAGATGAAGCCATTGCTTTCACTACCACT
CACCTGAAGTCATTGGTAGCTCAGGATCATGTAACCCCTAAGCTTGCGGA
ACAGATAAATCATGCTTTATACCGTCCTCTTCGTAAAACCCTACCAAGAT
TAGAGGCGAGGTATTTTATGTCCATGATCAATTCAACAAGTGATCATTTA
TACAATAAAACTCTGCTGAATTTTGCAAAGTTAGATTTTAACATATTGCT
AGAGCTGCACAAGGAGGAACTCAATGAATTAACAAAGTGGTGGAAAGATT
TAGACTTCACTACAAAACTACCTTATGCAAGAGACAGATTAGTGGAGTTA
TATTTTTGGGATTTAGGGACATACTTCGAGCCTCAATATGCATTTGGCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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